RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CX3CR1P49238 355 aa21.86■■□□□ 1.09
SHMT1-207ENST00000580002 ZNF283Q8N7M2 679 aa21.86■■□□□ 1.09
SHMT1-207ENST00000580002 KCNJ15Q99712 375 aa21.86■■□□□ 1.09
SHMT1-207ENST00000580002 JKAMPQ9P055 326 aa21.86■■□□□ 1.09
SHMT1-207ENST00000580002 RALYQ9UKM9 306 aaKnown RBP21.86■■□□□ 1.09
SHMT1-207ENST00000580002 C1QL1O75973 258 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 ZNF121P58317 390 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-207ENST00000580002 TAS2R43P59537 309 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 VBP1P61758 197 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 NCS1P62166 190 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 RPS11P62280 158 aaKnown RBP eCLIP21.85■■□□□ 1.09
SHMT1-207ENST00000580002 P2RY6Q15077 328 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 CCDC58Q4VC31 144 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 TMEM91Q6ZNR0 172 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 C12orf43Q96C57 262 aaKnown RBP21.85■■□□□ 1.09
SHMT1-207ENST00000580002 SLC17A5Q9NRA2 495 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 GALNT8Q9NY28 637 aa21.85■■□□□ 1.09
SHMT1-207ENST00000580002 AIREO43918 545 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 FDX2Q6P4F2 183 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 PRSS45Q7RTY3 260 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 DGCR14Q96DF8 476 aaKnown RBP21.84■■□□□ 1.09
SHMT1-207ENST00000580002 CCDC120Q96HB5 630 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 SOX7Q9BT81 388 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 PIGMQ9H3S5 423 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 EXOSC4Q9NPD3 245 aaKnown RBP21.84■■□□□ 1.09
SHMT1-207ENST00000580002 OR52A1Q9UKL2 312 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 LOC110117498-PIK3R3F6TDL0 507 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 H3BMQ9 156 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 GABARAPO95166 117 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 ATE1O95260 518 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 GABRA5P31644 462 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 OTX1P32242 354 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-207ENST00000580002 GSG1Q2KHT4 349 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 KRTAP27-1Q3LI81 207 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 RHOUQ7L0Q8 258 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 MRGPRGQ86SM5 289 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 ZNF843Q8N446 348 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 OR51A4Q8NGJ6 313 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 S100PBPQ96BU1 408 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 MYCBPQ99417 103 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-207ENST00000580002 HDHD2Q9H0R4 259 aa21.84■■□□□ 1.09
SHMT1-207ENST00000580002 PPIL3Q9H2H8 161 aaKnown RBP21.84■■□□□ 1.09
SHMT1-207ENST00000580002 MMP16P51512 607 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 UBE2NP61088 152 aaKnown RBP21.83■■□□□ 1.09
SHMT1-207ENST00000580002 GRB2P62993 217 aaKnown RBP21.83■■□□□ 1.09
SHMT1-207ENST00000580002 GPR50Q13585 617 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 FAM27D1Q5T7N8 215 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 FAM57BQ71RH2 274 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 EGFL6Q8IUX8 553 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 ABHD4Q8TB40 342 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 ORAI1Q96D31 301 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 PBOV1Q9GZY1 135 aa21.83■■□□□ 1.09
SHMT1-207ENST00000580002 RSL24D1Q9UHA3 163 aaKnown RBP21.83■■□□□ 1.09
SHMT1-207ENST00000580002 DIDO1Q9BTC0 2240 aaKnown RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 KMT2BQ9UMN6 2715 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 UBL3O95164 117 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 CCKARP32238 428 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 PSMA6P60900 246 aaKnown RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 SPCS2Q15005 226 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 ALKBH2Q6NS38 261 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 PAQR4Q8N4S7 273 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 OR5AK2Q8NH90 309 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 STUB1Q9UNE7 303 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 HIVEP3Q5T1R4 2406 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 A0A1W2PPK0 400 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 B8ZZF3 427 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 M0R135 149 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 TTRP02766 147 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 ANXA2P07355 339 aaKnown RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 ACSM4P0C7M7 580 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 CCNOP22674 350 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 PSMA1P25786 263 aaKnown RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 DCTDP32321 178 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 ARR3P36575 388 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 SLC6A9P48067 706 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 TMBIM6P55061 237 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 TMEM53Q6P2H8 277 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 GALNT11Q8NCW6 608 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 C1orf162Q8NEQ5 155 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-207ENST00000580002 OR8B12Q8NGG6 310 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF799Q96GE5 643 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 BOD1Q96IK1 185 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 DOK1Q99704 481 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 COQ7Q99807 217 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 NDUFA13Q9P0J0 144 aa21.82■■□□□ 1.08
SHMT1-207ENST00000580002 P2RY10O00398 339 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 GABRPO00591 440 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 IL32P24001 234 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF829Q3KNS6 432 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-207ENST00000580002 SNAI3Q3KNW1 292 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 C22orf42Q6IC83 251 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 CD200R1LQ6Q8B3 271 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF676Q8N7Q3 588 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 WACQ9BTA9 647 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 FAM192AQ9GZU8 254 aa21.81■■□□□ 1.08
SHMT1-207ENST00000580002 TXNL4BQ9NX01 149 aaKnown RBP21.81■■□□□ 1.08
SHMT1-207ENST00000580002 OR5H1A6NKK0 313 aa21.8■■□□□ 1.08
SHMT1-207ENST00000580002 FAM90A27PA6NNH2 459 aa21.8■■□□□ 1.08
SHMT1-207ENST00000580002 PSMB1P20618 241 aaKnown RBP21.8■■□□□ 1.08
SHMT1-207ENST00000580002 STOMP27105 288 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms