RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ZNF3P17036 446 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 TNFSF4P23510 183 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 IGFBP5P24593 272 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 FMO3P31513 532 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 CBX1P83916 185 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 DBPQ10586 325 aaPredicted RBP12.6□□□□□ -0.39
SS18-212ENST00000579061 PCK2Q16822 640 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 NRBF2Q96F24 287 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 MAP6Q96JE9 813 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 BEX2Q9BXY8 128 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 MMADHCQ9H3L0 296 aaPredicted RBP12.6□□□□□ -0.39
SS18-212ENST00000579061 B4DSR2 109 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 H3BN98 237 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 SURF4O15260 269 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 IFNA2P01563 188 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 ACSM4P0C7M7 580 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 SPI1P17947 270 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 TNFRSF1AP19438 455 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 PCMT1P22061 227 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 ENTPD1P49961 510 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 DVL1P1P54792 670 aaPredicted RBP12.59□□□□□ -0.39
SS18-212ENST00000579061 TPTEP56180 551 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 LMO4P61968 165 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 TNFAIP6P98066 277 aaPredicted RBP12.59□□□□□ -0.39
SS18-212ENST00000579061 CCNIQ14094 377 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 TEX30Q5JUR7 227 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 SLC27A4Q6P1M0 643 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 Q6ZR03 302 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 OR9Q1Q8NGQ5 310 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 ZNRF4Q8WWF5 429 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 RAB1CQ92928 201 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 SPTSSAQ969W0 71 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 SLCO4A1Q96BD0 722 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 TIMD4Q96H15 378 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 ZNF556Q9HAH1 456 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 DDX28Q9NUL7 540 aaKnown RBP12.59□□□□□ -0.39
SS18-212ENST00000579061 PTTG3PQ9NZH4 202 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 IL19Q9UHD0 177 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 COMMD3-BMI1R4GMX3 469 aa12.59□□□□□ -0.39
SS18-212ENST00000579061 TVP23AA6NH52 213 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 IQCF6A8MYZ5 107 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 F5H5K5 113 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 WNT9BO14905 357 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 DEAF1O75398 565 aaPredicted RBP12.58□□□□□ -0.4
SS18-212ENST00000579061 OSMP13725 252 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 SELEP16581 610 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 HNF1AP20823 631 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 OTX1P32242 354 aaPredicted RBP12.58□□□□□ -0.4
SS18-212ENST00000579061 HLXQ14774 488 aaPredicted RBP12.58□□□□□ -0.4
SS18-212ENST00000579061 LINC01590Q5TEZ4 76 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 OR8G5Q8NG78 346 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 OR51L1Q8NGJ5 315 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 OR10S1Q8NGN2 331 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 DNAJC9Q8WXX5 260 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 HCAR1Q9BXC0 346 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 WIPI2Q9Y4P8 454 aa12.58□□□□□ -0.4
SS18-212ENST00000579061 ATRQ13535 2644 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 KIAA1324LA8MWY0 1029 aaPredicted RBP12.57□□□□□ -0.4
SS18-212ENST00000579061 M0R135 149 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 HMGN1P05114 100 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 GYPBP06028 91 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 ANPEPP15144 967 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 PAICSP22234 425 aaKnown RBP12.57□□□□□ -0.4
SS18-212ENST00000579061 THBS2P35442 1172 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 CDK5Q00535 292 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 FAM120AOSQ5T036 256 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 ACSM5Q6NUN0 579 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 SHQ1Q6PI26 577 aaKnown RBP12.57□□□□□ -0.4
SS18-212ENST00000579061 DCXRQ7Z4W1 244 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 PEG10Q86TG7 708 aaKnown RBP12.57□□□□□ -0.4
SS18-212ENST00000579061 ZNF511Q8NB15 262 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 OR2Z1Q8NG97 314 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 OR13G1Q8NGZ3 307 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 CCL17Q92583 94 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 RAB39BQ96DA2 213 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 ZNF799Q96GE5 643 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 ZNF582Q96NG8 517 aaPredicted RBP12.57□□□□□ -0.4
SS18-212ENST00000579061 NARFLQ9H6Q4 476 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 WDR76Q9H967 626 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 MARCH7Q9H992 704 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 NTN4Q9HB63 628 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 CACNG2Q9Y698 323 aa12.57□□□□□ -0.4
SS18-212ENST00000579061 A0A1B0GWJ7 208 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 IFNL4K9M1U5 179 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 ZNF593O00488 134 aaPredicted RBP12.56□□□□□ -0.4
SS18-212ENST00000579061 GLCEO94923 617 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 LCATP04180 440 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 CLUP10909 449 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 POU1F1P28069 291 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 RPS27P42677 84 aaKnown RBP12.56□□□□□ -0.4
SS18-212ENST00000579061 ERFP50548 548 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 MVKQ03426 396 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 MALLQ13021 153 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 GINS1Q14691 196 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 CR1LQ2VPA4 569 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 AVPI1Q5T686 147 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 OR2T2Q6IF00 324 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 LYPD4Q6UWN0 246 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 DRAM2Q6UX65 266 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 RHOUQ7L0Q8 258 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms