RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZSCAN5BA6NJL1 495 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 M0R135 149 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 MITFO75030 526 aaPredicted RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 GLCEO94923 617 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 LCATP04180 440 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 GSTT1P30711 240 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 LOXL1Q08397 574 aaPredicted RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 PSG7Q13046 419 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 EIF2B1Q14232 305 aaKnown RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 HLXQ14774 488 aaPredicted RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 TMEM249Q2WGJ8 235 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 TMEM255AQ5JRV8 349 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 FAHD1Q6P587 224 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 CPOQ8IVL8 374 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 SLAMF6Q96DU3 332 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 ZMYND19Q96E35 227 aaPredicted RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 DUS3LQ96G46 650 aaKnown RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 ZNF799Q96GE5 643 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 NARFLQ9H6Q4 476 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 SLC25A19Q9HC21 320 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 YAE1D1Q9NRH1 226 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 CYSLTR2Q9NS75 346 aa16.63■□□□□ 0.25
SS18-209ENST00000578595 CGGBP1Q9UFW8 167 aaPredicted RBP16.63■□□□□ 0.25
SS18-209ENST00000578595 PPIHO43447 177 aaKnown RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 IGHV1-46P01743 117 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 ACSM4P0C7M7 580 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 PSKH1P11801 424 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 TUBG1P23258 451 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 IGFBP5P24593 272 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 LIPAP38571 399 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 GPR6P46095 362 aaPredicted RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 CDK5Q00535 292 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 MALLQ13021 153 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 USP51Q70EK9 711 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 CXXC5Q7LFL8 322 aaKnown RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 RAB3IPQ96QF0 476 aaPredicted RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 EGLN1Q9GZT9 426 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 CHODLQ9H9P2 273 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 TUBG2Q9NRH3 451 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 PURGQ9UJV8 347 aaKnown RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 OAZ3Q9UMX2 235 aa16.62■□□□□ 0.25
SS18-209ENST00000578595 FN1P02751 2386 aaKnown RBP16.62■□□□□ 0.25
SS18-209ENST00000578595 A0A096LNT2 108 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 IGHV4-61A0A0C4DH41 118 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 VWC2LB2RUY7 222 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 J3QW42 95 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 ZNF16P17020 682 aaPredicted RBP16.61■□□□□ 0.25
SS18-209ENST00000578595 ACHEP22303 614 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 COL8A2P25067 703 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 HSD11B1P28845 292 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 MMP15P51511 669 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 PRKXP51817 358 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 ACTR3P61158 418 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 DPY19L4Q7Z388 723 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 PARP8Q8N3A8 854 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 ZNF283Q8N7M2 679 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 BHLHE23Q8NDY6 225 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 OR2Z1Q8NG97 314 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 OR10S1Q8NGN2 331 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 PTP4A1Q93096 173 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 CENPNQ96H22 339 aaPredicted RBP16.61■□□□□ 0.25
SS18-209ENST00000578595 PNRC2Q9NPJ4 139 aaKnown RBP16.61■□□□□ 0.25
SS18-209ENST00000578595 ZNF275Q9NSD4 429 aaPredicted RBP16.61■□□□□ 0.25
SS18-209ENST00000578595 ENOPH1Q9UHY7 261 aa16.61■□□□□ 0.25
SS18-209ENST00000578595 NIPBLQ6KC79 2804 aaeCLIP16.6■□□□□ 0.25
SS18-209ENST00000578595 IGHV1-69-2A0A0G2JMI3 117 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 LRP5LA4QPB2 252 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 ZNF878C9JN71 531 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 CD5LO43866 347 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 TNFSF4P23510 183 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 GIFP27352 417 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 NAA10P41227 235 aaPredicted RBP16.6■□□□□ 0.25
SS18-209ENST00000578595 PRSS12P56730 875 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 ESRRGP62508 458 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 TNFAIP6P98066 277 aaPredicted RBP16.6■□□□□ 0.25
SS18-209ENST00000578595 PTGES3Q15185 160 aaKnown RBP16.6■□□□□ 0.25
SS18-209ENST00000578595 FAM209AQ5JX71 171 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 LINC01590Q5TEZ4 76 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 OR2T2Q6IF00 324 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 MRPL21Q7Z2W9 205 aaKnown RBP16.6■□□□□ 0.25
SS18-209ENST00000578595 NAA40Q86UY6 237 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 BBS1Q8NFJ9 593 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 YIPF5Q969M3 257 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 ELMOD3Q96FG2 381 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 GABARAPL1Q9H0R8 117 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 RIBC2Q9H4K1 309 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 TREM2Q9NZC2 230 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 ZDHHC8Q9ULC8 765 aa16.6■□□□□ 0.25
SS18-209ENST00000578595 INAFM1C9JVW0 142 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 M0R129 80 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 PRODHO43272 600 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 SELENOFO60613 162 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 RAC2P15153 192 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 SLC15A1P46059 708 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 CHN2P52757 468 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 KRTAP1-1Q07627 177 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 APOFQ13790 326 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 TRIP10Q15642 601 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 HFEQ30201 348 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 SHFQ7M4L6 423 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms