RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GTF2H1P32780 548 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CDH5P33151 784 aaPredicted RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 TNFSF9P41273 254 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 AP3S2P59780 193 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 GNB2P62879 340 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CKAP4Q07065 602 aaKnown RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 PJVKQ0ZLH3 352 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ILKQ13418 452 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 MED21Q13503 144 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 TSC22D1Q15714 1073 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CYP51A1Q16850 503 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 NDUFAF6Q330K2 333 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 PTPN20Q4JDL3 420 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 AKIRIN2Q53H80 203 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CYBRD1Q53TN4 286 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 C5orf47Q569G3 176 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ZNF691Q5VV52 312 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ULK3Q6PHR2 472 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 BTNL3Q6UXE8 466 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ASCL4Q6XD76 172 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 LRRC74BQ6ZQY2 392 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 MOB1BQ7L9L4 216 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 MRPL21Q7Z2W9 205 aaKnown RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 TAC4Q86UU9 113 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 TGIF2LYQ8IUE0 185 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ZBTB8OSQ8IWT0 167 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 FAM71AQ8IYT1 594 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ARHGAP18Q8N392 663 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 METTL13Q8N6R0 699 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 OR5AU1Q8NGC0 362 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 OR5B17Q8NGF7 314 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 OR9G4Q8NGQ1 327 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 OR6Q1Q8NGQ2 317 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 HPDLQ96IR7 371 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 VSTM2LQ96N03 204 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 TSSK3Q96PN8 268 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CYP2S1Q96SQ9 504 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 NAPGQ99747 312 aaPredicted RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 ZNF251Q9BRH9 671 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 C7orf50Q9BRJ6 194 aaKnown RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 PARD6GQ9BYG4 376 aaPredicted RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 LHX5Q9H2C1 402 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 Q9H3A6 140 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ACP6Q9NPH0 428 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 OR2S2Q9NQN1 319 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 IMP3Q9NV31 184 aaKnown RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 USE1Q9NZ43 259 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CD274Q9NZQ7 290 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 PHF11Q9UIL8 331 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 PITPNC1Q9UKF7 332 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 POFUT2Q9Y2G5 429 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 CSDC2Q9Y534 153 aaKnown RBP3.53□□□□□ -1.84
NUP88-213ENST00000576862 FADS3Q9Y5Q0 445 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 ATAD5Q96QE3 1844 aa3.53□□□□□ -1.84
NUP88-213ENST00000576862 COL1A2P08123 1366 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 DICER1Q9UPY3 1922 aaKnown RBP3.52□□□□□ -1.85
NUP88-213ENST00000576862 A0A1W2PPE3 182 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 FABP12A6NFH5 140 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 BTNL10A8MVZ5 291 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 PRAMEF26H0Y7S4 382 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 OR7A17O14581 309 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 TPST2O60704 377 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 SNRPAP09012 282 aaKnown RBP3.52□□□□□ -1.85
NUP88-213ENST00000576862 SMIM10L2AP0DMW4 78 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 SMIM10L2BP0DMW5 78 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 CYBAP13498 195 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 LAP3P28838 519 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 HSD11B1P28845 292 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 HMOX2P30519 316 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 UGT1A3P35503 534 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 OR3A4PP47883 348 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 RAP1GDS1P52306 607 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 NUP107P57740 925 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 VSNL1P62760 191 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 SCRN3Q0VDG4 424 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 TFDP1Q14186 410 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 DPYSL3Q14195 570 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 UBE2V2Q15819 145 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 WHAMMP3Q1A5X7 153 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 C6orf183Q5T699 404 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 SPOPLQ6IQ16 392 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 FAM71F2Q6NXP2 309 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 TFAP2EQ6VUC0 442 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 STAC2Q6ZMT1 411 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 TRIM69Q86WT6 500 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 ENTHD1Q8IYW4 607 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 CYB561A3Q8NBI2 242 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 NFAM1Q8NET5 270 aaPredicted RBP3.52□□□□□ -1.85
NUP88-213ENST00000576862 OR1L4Q8NGR5 311 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 PYDC1Q8WXC3 89 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 NAT6Q93015 286 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 PSMG2Q969U7 264 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 CPNE4Q96A23 557 aaPredicted RBP3.52□□□□□ -1.85
NUP88-213ENST00000576862 FAM131CQ96AQ9 280 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 DNAJC1Q96KC8 554 aaKnown RBP3.52□□□□□ -1.85
NUP88-213ENST00000576862 NAT9Q9BTE0 207 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 GSDMCQ9BYG8 508 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 SRRQ9GZT4 340 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 OR2AG1Q9H205 316 aa3.52□□□□□ -1.85
NUP88-213ENST00000576862 PARVBQ9HBI1 364 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms