RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 FKBP9P1Q75LS8 142 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 NEIL1Q96FI4 390 aaPredicted RBP17.62■□□□□ 0.41
VPS53-216ENST00000574029 HSH2DQ96JZ2 352 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 TMEM246Q9BRR3 403 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 NUAK2Q9H093 628 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 SLITRK2Q9H156 845 aa17.62■□□□□ 0.41
VPS53-216ENST00000574029 KIR2DS1A0A191URI9 304 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 A0A1B0GWJ7 208 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 IQCF6A8MYZ5 107 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 ZNF404Q494X3 552 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 TREML4Q6UXN2 200 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 PTCHD4Q6ZW05 846 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 ADCK1Q86TW2 530 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 JAZF1Q86VZ6 243 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 TAF15Q92804 592 aaKnown RBP eCLIP17.61■□□□□ 0.41
VPS53-216ENST00000574029 PLEKHA8Q96JA3 519 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 COQ7Q99807 217 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 ENPP4Q9Y6X5 453 aa17.61■□□□□ 0.41
VPS53-216ENST00000574029 TRAV40A0A0B4J280 105 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 F5H5P2 479 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 NDUFAB1O14561 156 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 GPANK1O95872 356 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 SERPINA1P01009 418 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 FXYD6P3P58550 94 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 MOGAT3Q86VF5 341 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 CYP4Z1Q86W10 505 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 GJC3Q8NFK1 279 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 HDHD2Q9H0R4 259 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 IER3IP1Q9Y5U9 82 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 LHFPL6Q9Y693 200 aa17.6■□□□□ 0.41
VPS53-216ENST00000574029 DOCK11Q5JSL3 2073 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 A0A1W2PRQ8 180 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 LRRC30A6NM36 301 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 NME4O00746 187 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 SOCS2O14508 198 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 GSTA4O15217 222 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 TXNDC12O95881 172 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 PMELP40967 661 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 CDKN2AP42771 156 aaKnown RBP17.59■□□□□ 0.41
VPS53-216ENST00000574029 OMPP47874 163 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 NUDT2P50583 147 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 DGCR6Q14129 220 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 RSPO1Q2MKA7 263 aaPredicted RBP17.59■□□□□ 0.41
VPS53-216ENST00000574029 PGM2L1Q6PCE3 622 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 C16orf87Q6PH81 154 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 DPY19L2P2Q6ZN68 376 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 COLCA1Q6ZS62 124 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 C1orf87Q8N0U7 546 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 OR8B3Q8NGG8 313 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 OR8B2Q96RD0 313 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 PRDM13Q9H4Q3 707 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 POLR1DQ9Y2S0 133 aa17.59■□□□□ 0.41
VPS53-216ENST00000574029 IGHV3-64DA0A0J9YX35 117 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 MDFIC2A0A1B0GVS7 189 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 H1F0P07305 194 aaKnown RBP17.58■□□□□ 0.4
VPS53-216ENST00000574029 MDKP21741 143 aaPredicted RBP17.58■□□□□ 0.4
VPS53-216ENST00000574029 GATA4P43694 442 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 PITPNBP48739 271 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 SLC7A2P52569 658 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 COX10Q12887 443 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 MEP1BQ16820 701 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 KRTAP27-1Q3LI81 207 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 FAM201AQ5SY85 155 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 NLRC3Q7RTR2 1065 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 FITM2Q8N6M3 262 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 BHLHE23Q8NDY6 225 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 TMIGD2Q96BF3 282 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 RSRC1Q96IZ7 334 aaKnown RBP17.58■□□□□ 0.4
VPS53-216ENST00000574029 TSSK2Q96PF2 358 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 NUDT16L1Q9BRJ7 211 aaKnown RBP17.58■□□□□ 0.4
VPS53-216ENST00000574029 TMEM100Q9NV29 134 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 ABCD2Q9UBJ2 740 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 TAGLN3Q9UI15 199 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 MMP24Q9Y5R2 645 aa17.58■□□□□ 0.4
VPS53-216ENST00000574029 DCTN6O00399 190 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 HOXA3O43365 443 aaPredicted RBP17.57■□□□□ 0.4
VPS53-216ENST00000574029 SELEP16581 610 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 FPR3P25089 353 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 CRABP1P29762 137 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 GSK3BP49841 420 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 RPS6KA3P51812 740 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 PSME3P61289 254 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 KRT72Q14CN4 511 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 DNM1P34Q6PK57 102 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 OR10S1Q8NGN2 331 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 HCAR1Q9BXC0 346 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 WDR76Q9H967 626 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 ARL8BQ9NVJ2 186 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 CLN8Q9UBY8 286 aa17.57■□□□□ 0.4
VPS53-216ENST00000574029 IGLV1-36A0A0B4J1U3 117 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 HLA-DPB1P04440 258 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 CENPAP49450 140 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 MAB21L1Q13394 359 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 DEFB112Q30KQ8 113 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 PDLIM3Q53GG5 364 aaPredicted RBP17.56■□□□□ 0.4
VPS53-216ENST00000574029 WDR25Q64LD2 544 aaPredicted RBP17.56■□□□□ 0.4
VPS53-216ENST00000574029 CORO6Q6QEF8 472 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 LYPD2Q6UXB3 125 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 ZNF841Q6ZN19 808 aa17.56■□□□□ 0.4
VPS53-216ENST00000574029 DCDC5Q6ZRR9 648 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms