RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR8J3Q8NGG0 315 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZNF418Q8TF45 676 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 SNX33Q8WV41 574 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 CCL17Q92583 94 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 RAB39BQ96DA2 213 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ELMOD3Q96FG2 381 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZNF486Q96H40 463 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZNF48Q96MX3 618 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 RDH12Q96NR8 316 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 SIGLEC11Q96RL6 698 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 COQ7Q99807 217 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 APOL4Q9BPW4 351 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ALG12Q9BV10 488 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 MSL2Q9HCI7 577 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 MMP26Q9NRE1 261 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 DECR2Q9NUI1 292 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ARMCX1Q9P291 453 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 ZMAT5Q9UDW3 170 aaKnown RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 GPR160Q9UJ42 338 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 NUP50Q9UKX7 468 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 POLR3KQ9Y2Y1 108 aaPredicted RBP5.67□□□□□ -1.5
VPS53-213ENST00000572334 SNX5Q9Y5X3 404 aa5.67□□□□□ -1.5
VPS53-213ENST00000572334 PPIAL4EA0A075B759 164 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 TRAV27A0A087WT01 109 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 A0A087WUU8 490 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 PPIAL4CA0A0B4J2A2 164 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CENPXA8MT69 81 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 FAM220BPB1ANY3 271 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 F5H0A9 414 aaPredicted RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 PPIAL4DF5H284 164 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 H0YAE9 185 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 H3BMQ9 156 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 H7C1C5 153 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CDC42EP2O14613 210 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 KCNAB3O43448 404 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 SPRY1O43609 319 aaPredicted RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 MRPS14O60783 128 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 SNAPC5O75971 98 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 TRAPPC2P0DI81 140 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 TRAPPC2BP0DI82 140 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 PPIAL4FP0DN26 164 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 IFI30P13284 250 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 KDELR2P33947 212 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 YAP1P46937 504 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 GDI2P50395 445 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 BMXP51813 675 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CTXN1P60606 82 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 LCN6P62502 163 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 UBA52P62987 128 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 ACTG1P63261 375 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 SELENOWP63302 87 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 LCN2P80188 198 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 MRPS15P82914 257 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 PAX2Q02962 417 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 PRKCDQ05655 676 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CD47Q08722 323 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 KLF10Q13118 480 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 HFEQ30201 348 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 SMUG1Q53HV7 270 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 COQ5Q5HYK3 327 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 DCAF12L2Q5VW00 463 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 OTPQ5XKR4 325 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 SHQ1Q6PI26 577 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 TBPL2Q6SJ96 375 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 PLEKHG7Q6ZR37 379 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 FAM122BQ7Z309 247 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 VTCN1Q7Z7D3 282 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 NRMQ8IXM6 262 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 MICU2Q8IYU8 434 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 BCL6BQ8N143 479 aaPredicted RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 GALNT4Q8N4A0 578 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 POU5F2Q8N7G0 328 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 ZNF283Q8N7M2 679 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 ASCC1Q8N9N2 400 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 FAM156AQ8NDB6 213 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 OR13C2Q8NGS9 318 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 ABHD4Q8TB40 342 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 NANPQ8TBE9 248 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 GIMAP1Q8WWP7 306 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 C22orf15Q8WYQ4 148 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 RAB1CQ92928 201 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 DACT3Q96B18 629 aaPredicted RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 CCDC124Q96CT7 223 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 BPIFA2Q96DR5 249 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 C4orf45Q96LM5 186 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 PRRC1Q96M27 445 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 COG8Q96MW5 612 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 GAL3ST1Q99999 423 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 RBM4Q9BWF3 364 aaKnown RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 C1QTNF5Q9BXJ0 243 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 GON7Q9BXV9 100 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 C7orf69Q9H7B7 122 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 EMC7Q9NPA0 242 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CCNB1IP1Q9NPC3 277 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 POLE4Q9NR33 117 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 CMTM6Q9NX76 183 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 RHCGQ9UBD6 479 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 ZNF221Q9UK13 617 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 BAG5Q9UL15 447 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 MED31Q9Y3C7 131 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms