RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR8B8Q15620 311 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 C1orf94Q6P1W5 598 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 TTC33Q6PID6 262 aaPredicted RBP14.68□□□□□ -0.06
CLK3-227ENST00000570296 PNKDQ8N490 385 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 BHLHE23Q8NDY6 225 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 SDR9C7Q8NEX9 313 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 FNDC8Q8TC99 324 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 TNFRSF14Q92956 283 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 VPS33AQ96AX1 596 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 APOPT1Q96IL0 206 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 MAELQ96JY0 434 aaKnown RBP14.68□□□□□ -0.06
CLK3-227ENST00000570296 ZBTB18Q99592 522 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 DCTN5Q9BTE1 182 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 ALG12Q9BV10 488 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 UFSP2Q9NUQ7 469 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 PTTG3PQ9NZH4 202 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 KAAG1Q9UBP8 84 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 SLC13A4Q9UKG4 626 aa14.68□□□□□ -0.06
CLK3-227ENST00000570296 WDR91A4D1P6 747 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 PRORSD1PA6NEY8 169 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 OOEPA6NGQ2 149 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 NPIPB13A6NJU9 1138 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 NPIPB4C9JG80 1138 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 SGCEO43556 437 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 PEX14O75381 377 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 HLA-DPB1P04440 258 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 CD83Q01151 205 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 FADDQ13158 208 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 HABP2Q14520 560 aaPredicted RBP14.67□□□□□ -0.06
CLK3-227ENST00000570296 NCR3LG1Q68D85 454 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 OGFOD2Q6N063 350 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 Q8N7P7 452 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 Q8NFD4 153 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 RBP7Q96R05 134 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 NKX3-1Q99801 234 aaPredicted RBP14.67□□□□□ -0.06
CLK3-227ENST00000570296 WFDC6Q9BQY6 131 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 CPPED1Q9BRF8 314 aaPredicted RBP14.67□□□□□ -0.06
CLK3-227ENST00000570296 CHID1Q9BWS9 393 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 MEGF9Q9H1U4 602 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 RAD21L1Q9H4I0 556 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 INPP5EQ9NRR6 644 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 AIG1Q9NVV5 245 aa14.67□□□□□ -0.06
CLK3-227ENST00000570296 KPNA4O00629 521 aaPredicted RBP14.66□□□□□ -0.06
CLK3-227ENST00000570296 HDAC3O15379 428 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 GYPAP02724 150 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 IL6P05231 212 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 MPPED2Q15777 294 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 GTDC1Q4AE62 458 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 PRAMEF6Q5VXH4 476 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 C10orf111Q8N326 155 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 BOLLQ8N9W6 283 aaKnown RBP14.66□□□□□ -0.06
CLK3-227ENST00000570296 MCHR1Q99705 422 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 PPCSQ9HAB8 311 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 PALMDQ9NP74 551 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 SLC17A7Q9P2U7 560 aa14.66□□□□□ -0.06
CLK3-227ENST00000570296 ZMAT5Q9UDW3 170 aaKnown RBP14.66□□□□□ -0.06
CLK3-227ENST00000570296 CLIC3O95833 236 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 ALDOCP09972 364 aaKnown RBP14.65□□□□□ -0.06
CLK3-227ENST00000570296 BGNP21810 368 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 REEP3Q6NUK4 255 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 MEPCEQ7L2J0 689 aaKnown RBP14.65□□□□□ -0.06
CLK3-227ENST00000570296 FAM90A1Q86YD7 464 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 ZNF781Q8N8C0 355 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 RORBQ92753 470 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 MPP4Q96JB8 637 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 ZNF426Q9BUY5 554 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 POLE4Q9NR33 117 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 DNAJB11Q9UBS4 358 aa14.65□□□□□ -0.06
CLK3-227ENST00000570296 A0A1W2PPL8 197 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 LYPD3O95274 346 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 IFNW1P05000 195 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 AQP2P41181 271 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 DLX1P56177 255 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 NFKBIDQ8NI38 313 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 C8orf46Q8TAG6 207 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 C17orf50Q8WW18 174 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 SLC7A6Q92536 515 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 APOBEC3DQ96AK3 386 aaPredicted RBP14.64□□□□□ -0.07
CLK3-227ENST00000570296 ITCHQ96J02 903 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 TXLNGYQ9BZA5 131 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 TXNIPQ9H3M7 391 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 RMND5AQ9H871 391 aa14.64□□□□□ -0.07
CLK3-227ENST00000570296 OR6C6A6NF89 314 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 PTBP3O95758 552 aaKnown RBP14.63□□□□□ -0.07
CLK3-227ENST00000570296 CHRM2P08172 466 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 BEND6Q5SZJ8 279 aaPredicted RBP14.63□□□□□ -0.07
CLK3-227ENST00000570296 MSANTD1Q6ZTZ1 278 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 PLPP7Q8NBV4 271 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 AJUBAQ96IF1 538 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 HCAR1Q9BXC0 346 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 ATPIF1Q9UII2 106 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 ANGPT4Q9Y264 503 aa14.63□□□□□ -0.07
CLK3-227ENST00000570296 SMIM23A6NLE4 172 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 THY1P04216 161 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 SHBGP04278 402 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 SCG5P05408 212 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 VIMP08670 466 aaKnown RBP14.62□□□□□ -0.07
CLK3-227ENST00000570296 TSPAN19P0C672 248 aa14.62□□□□□ -0.07
CLK3-227ENST00000570296 PAICSP22234 425 aaKnown RBP14.62□□□□□ -0.07
CLK3-227ENST00000570296 BMXP51813 675 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms