RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 EEF1B2P24534 225 aaKnown RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 FPR3P25089 353 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 PAX6P26367 422 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 AQP1P29972 269 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SAA4P35542 130 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 GATA4P43694 442 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 RPL14P50914 215 aaKnown RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 ABCE1P61221 599 aaKnown RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 DOC2BQ14184 412 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 OR8B8Q15620 311 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 ENTPD8Q5MY95 495 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 CASC10Q5T4H9 136 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 OTPQ5XKR4 325 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 REEP3Q6NUK4 255 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 FBXW12Q6X9E4 464 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 KRT73Q86Y46 540 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 RBM45Q8IUH3 476 aaKnown RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 SMYD1Q8NB12 490 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 OR11L1Q8NGX0 322 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 Q8TCH9 128 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 UBLCP1Q8WVY7 318 aaPredicted RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 ST8SIA4Q92187 359 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 ITCHQ96J02 903 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SORT1Q99523 831 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SSX3Q99909 188 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SPATA5L1Q9BVQ7 753 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 PCDHAC1Q9H158 963 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 WDR76Q9H967 626 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 VIPAS39Q9H9C1 493 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SERTAD4Q9NUC0 356 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 PNPOQ9NVS9 261 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 RPUSD1Q9UJJ7 312 aaKnown RBP9.59□□□□□ -0.87
CLK3-222ENST00000568232 SLC13A4Q9UKG4 626 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 SLC7A7Q9UM01 511 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 RAP2CQ9Y3L5 183 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 MAB21L2Q9Y586 359 aa9.59□□□□□ -0.87
CLK3-222ENST00000568232 A0A1B0GW55 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 C12orf71A8MTZ7 269 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 LGALS8O00214 317 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 SDHDO14521 159 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 HDAC3O15379 428 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DBHP09172 617 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L2P0CJ85 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L3P0CJ86 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L4P0CJ87 422 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L5P0CJ88 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L6P0CJ89 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L7P0CJ90 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 FUT1P19526 365 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 MSR1P21757 451 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 GUCA1AP43080 201 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 ELF3P78545 371 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 CDK6Q00534 326 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 FADDQ13158 208 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 TOP3AQ13472 1001 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 CRIP3Q6Q6R5 217 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4L9Q6RFH8 374 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 METAP1DQ6UB28 335 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 FOXL2NBQ6ZUU3 175 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 HDDC2Q7Z4H3 204 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 SYT9Q86SS6 491 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 Q8N7P7 452 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 GOLGA6L1Q8N7Z2 621 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 OR4D11Q8NGI4 311 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 OR6T1Q8NGN1 323 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 ADAMTS16Q8TE57 1224 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 NKX3-1Q99801 234 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 ECSITQ9BQ95 431 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 PAIP1Q9H074 479 aaKnown RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 WDR55Q9H6Y2 383 aaPredicted RBP9.58□□□□□ -0.88
CLK3-222ENST00000568232 C20orf141Q9NUB4 165 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 TMEM100Q9NV29 134 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 FAM53CQ9NYF3 392 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 RNF7Q9UBF6 113 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 DUX4Q9UBX2 424 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 CSMD3Q7Z407 3707 aa9.58□□□□□ -0.88
CLK3-222ENST00000568232 HYDINQ4G0P3 5121 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 PRORSD1PA6NEY8 169 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 SGCEO43556 437 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 CHST1O43916 411 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 SLC22A3O75751 556 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 ZNF26P17031 533 aaPredicted RBP9.57□□□□□ -0.88
CLK3-222ENST00000568232 RAD23AP54725 363 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 KCNJ8Q15842 424 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 DUSP7Q16829 419 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 HSP90B2PQ58FF3 399 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 DMRTC1Q5HYR2 192 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 GCNT6Q5T4J0 391 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 SLC2A7Q6PXP3 512 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 ARMC8Q8IUR7 673 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 PAPD5Q8NDF8 572 aaKnown RBP9.57□□□□□ -0.88
CLK3-222ENST00000568232 BEND2Q8NDZ0 799 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 PFN4Q8NHR9 129 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 WIPF2Q8TF74 440 aaPredicted RBP9.57□□□□□ -0.88
CLK3-222ENST00000568232 GTF2H4Q92759 462 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 COG8Q96MW5 612 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 RBP7Q96R05 134 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 OR5M11Q96RB7 305 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 PRSS27Q9BQR3 290 aa9.57□□□□□ -0.88
CLK3-222ENST00000568232 ZNF426Q9BUY5 554 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms