RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 LEG1Q6P5S2 330 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 COLCA1Q6ZS62 124 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 JAZF1Q86VZ6 243 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 ZMYND19Q96E35 227 aaPredicted RBP13.49□□□□□ -0.25
CLN3-229ENST00000567963 PYURFQ96I23 114 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 SLC30A2Q9BRI3 323 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 TMEM165Q9HC07 324 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 CEACAM18A8MTB9 384 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 IQCF6A8MYZ5 107 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 MLNRO43193 412 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 HIST1H1CP16403 213 aaKnown RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 EGR1P18146 543 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 CPT2P23786 658 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SRP9P49458 86 aaKnown RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 DBPQ10586 325 aaPredicted RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 KRTAP27-1Q3LI81 207 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 AWAT1Q58HT5 328 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 RBMS3Q6XE24 437 aaKnown RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 SIGLECL1Q8N7X8 197 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SLC26A10Q8NG04 563 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 FANK1Q8TC84 345 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 MRI1Q9BV20 369 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 C1QTNF5Q9BXJ0 243 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 WDR76Q9H967 626 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 ZNF69Q9UC07 566 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 LRCH1Q9Y2L9 728 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 V9GYQ6 96 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 A0A1B0GWJ7 208 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 ZNF205O95201 554 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 CYB5R3P00387 301 aaPredicted RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 RENP00797 406 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 FPR3P25089 353 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SLC6A6P31641 620 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SPIBQ01892 262 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 PAX8Q06710 450 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 ZNF181Q2M3W8 571 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SLC18B1Q6NT16 456 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 CFAP77Q6ZQR2 320 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 DOK3Q7L591 496 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 ZBTB46Q86UZ6 589 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 BHLHE23Q8NDY6 225 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 OR4K13Q8NH42 304 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SGMS2Q8NHU3 365 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 IFT27Q9BW83 186 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 SSBP3Q9BWW4 388 aaPredicted RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 RPRD1BQ9NQG5 326 aaKnown RBP13.48□□□□□ -0.25
CLN3-229ENST00000567963 TMEM100Q9NV29 134 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 OR5V1Q9UGF6 321 aa13.48□□□□□ -0.25
CLN3-229ENST00000567963 DOCK11Q5JSL3 2073 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 IGHV3-64DA0A0J9YX35 117 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 OR6C68A6NDL8 312 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 F5H5K5 113 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 F5H5P2 479 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 OR10H3O60404 316 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 FSTL3O95633 263 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 ACSM4P0C7M7 580 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 HSD17B1P14061 328 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 SELEP16581 610 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 NOS3P29474 1203 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 CD80P33681 288 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 PAX2Q02962 417 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 GK2Q14410 553 aaPredicted RBP13.47□□□□□ -0.25
CLN3-229ENST00000567963 NAA40Q86UY6 237 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 MOGAT3Q86VF5 341 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 LINC00346Q8IVM7 164 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 BCL6BQ8N143 479 aaPredicted RBP13.47□□□□□ -0.25
CLN3-229ENST00000567963 PITX2Q99697 317 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 ATF6BQ99941 703 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 CDADC1Q9BWV3 514 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 HCAR1Q9BXC0 346 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 MIOXQ9UGB7 285 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 CYB5R1Q9UHQ9 305 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 MAGEL2Q9UJ55 1249 aa13.47□□□□□ -0.25
CLN3-229ENST00000567963 SPRY1O43609 319 aaPredicted RBP13.46□□□□□ -0.25
CLN3-229ENST00000567963 IDH3BO43837 385 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 HLA-DPB1P04440 258 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 PPIAL4GP0DN37 164 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 RPS2P15880 293 aaKnown RBP13.46□□□□□ -0.25
CLN3-229ENST00000567963 PRTN3P24158 256 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 MSX2P35548 267 aaPredicted RBP13.46□□□□□ -0.25
CLN3-229ENST00000567963 GGT2P36268 569 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 PMELP40967 661 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 ECH1Q13011 328 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 SLC36A3Q495N2 470 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 KLBQ86Z14 1044 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 OR2AJ1Q8NGZ0 328 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 MCUR1Q96AQ8 359 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 TMEM246Q9BRR3 403 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 PNRC2Q9NPJ4 139 aaKnown RBP13.46□□□□□ -0.25
CLN3-229ENST00000567963 CD300AQ9UGN4 299 aa13.46□□□□□ -0.25
CLN3-229ENST00000567963 LRRC30A6NM36 301 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 SNX3O60493 162 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 HLA-DQA2P01906 255 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 FABP3P05413 133 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 HKR1P10072 659 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 RRM2P31350 389 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 IFNGR2P38484 337 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 GATA4P43694 442 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 GSSP48637 474 aa13.45□□□□□ -0.26
CLN3-229ENST00000567963 PRSS12P56730 875 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms