RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 OR52E2Q8NGJ4 325 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 APOBEC3DQ96AK3 386 aaPredicted RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 DACT3Q96B18 629 aaPredicted RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 RSRC1Q96IZ7 334 aaKnown RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 COQ7Q99807 217 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 KCTD14Q9BQ13 255 aaPredicted RBP12.5□□□□□ -0.41
CLN3-228ENST00000567804 HDHD2Q9H0R4 259 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 ADA2Q9NZK5 511 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 POLR1DQ9Y2S0 133 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 LHFPL6Q9Y693 200 aa12.5□□□□□ -0.41
CLN3-228ENST00000567804 IGHV3OR16-10A0A075B7F0 116 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 IGHV2-70DA0A0C4DH43 119 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 A0A1W2PRQ8 180 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 IQCF6A8MYZ5 107 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 H0YL77 283 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 CLDN34H7C241 214 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 GPANK1O95872 356 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 TXNDC12O95881 172 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 PLATP00750 562 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 H1F0P07305 194 aaKnown RBP12.49□□□□□ -0.41
CLN3-228ENST00000567804 OMPP47874 163 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 GNB2P62879 340 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 DGCR6Q14129 220 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 ZNF181Q2M3W8 571 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 FGD3Q5JSP0 725 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 PGM2L1Q6PCE3 622 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 BTNL3Q6UXE8 466 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 LRRN1Q6UXK5 716 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 BHLHE23Q8NDY6 225 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 GJC3Q8NFK1 279 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 FAM162AQ96A26 154 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 SLC25A28Q96A46 364 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 UPRTQ96BW1 309 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 NEIL1Q96FI4 390 aaPredicted RBP12.49□□□□□ -0.41
CLN3-228ENST00000567804 ZNF582Q96NG8 517 aaPredicted RBP12.49□□□□□ -0.41
CLN3-228ENST00000567804 SLC30A2Q9BRI3 323 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 TMEM246Q9BRR3 403 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 UNKLQ9H9P5 680 aaKnown RBP12.49□□□□□ -0.41
CLN3-228ENST00000567804 SPAG4Q9NPE6 437 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 MIOXQ9UGB7 285 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 IER3IP1Q9Y5U9 82 aa12.49□□□□□ -0.41
CLN3-228ENST00000567804 A0A1B0GWJ7 208 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 F5H5P2 479 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 DCTN6O00399 190 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 FSTL3O95633 263 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 CRABP1P29762 137 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 MSX2P35548 267 aaPredicted RBP12.48□□□□□ -0.41
CLN3-228ENST00000567804 CDKN2AP42771 156 aaKnown RBP12.48□□□□□ -0.41
CLN3-228ENST00000567804 MTNR1AP48039 350 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 RPS6KA3P51812 740 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 SLC9A3R2Q15599 337 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 MEP1BQ16820 701 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 ZNF404Q494X3 552 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 LEG1Q6P5S2 330 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 DNM1P34Q6PK57 102 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 DPY19L2P2Q6ZN68 376 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 MOGAT3Q86VF5 341 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 JAZF1Q86VZ6 243 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 CCDC197Q8NCU1 140 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 RAB40AQ8WXH6 277 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 TSSK2Q96PF2 358 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 NDUFAF4Q9P032 175 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 RPS6KA6Q9UK32 745 aa12.48□□□□□ -0.41
CLN3-228ENST00000567804 SOX21Q9Y651 276 aaPredicted RBP12.48□□□□□ -0.41
CLN3-228ENST00000567804 IGLV1-36A0A0B4J1U3 117 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 TRAV40A0A0B4J280 105 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 TRBV4-1A0A0J9YWV2 114 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 IGHV3-64DA0A0J9YX35 117 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 LRRC30A6NM36 301 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 RHCEP18577 417 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 IL13RA1P78552 427 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 COX10Q12887 443 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 KRT72Q14CN4 511 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 SEC23BQ15437 767 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 RSPO1Q2MKA7 263 aaPredicted RBP12.47□□□□□ -0.41
CLN3-228ENST00000567804 FAM201AQ5SY85 155 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 CORO6Q6QEF8 472 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 COLCA1Q6ZS62 124 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.47□□□□□ -0.41
CLN3-228ENST00000567804 C1orf87Q8N0U7 546 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 PGAM4Q8N0Y7 254 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 FAM86B1Q8N7N1 296 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 OR8B3Q8NGG8 313 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 PLEKHA8Q96JA3 519 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 C7orf34Q96L11 122 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 OR8B2Q96RD0 313 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 WDR76Q9H967 626 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 AURKCQ9UQB9 309 aa12.47□□□□□ -0.41
CLN3-228ENST00000567804 KIR2DS1A0A191URI9 304 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 UNC119BA6NIH7 251 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 POM121CA8CG34 1229 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 NDUFAB1O14561 156 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 PPP1R3DO95685 299 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 HLA-DPB1P04440 258 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 T-ENOLP0DO92 83 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 SELEP16581 610 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 PMELP40967 661 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 GATA4P43694 442 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 PITPNBP48739 271 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 CENPAP49450 140 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms