RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CCDC74BQ96LY2 380 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 MRTO4Q9UKD2 239 aaKnown RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 SLC22A13Q9Y226 551 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 KIF26BQ2KJY2 2108 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 TRAV14DV4A0A0A6YYC5 116 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 A0A0A6YYH2 397 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 FITM1A5D6W6 292 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 A6NJ64 397 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 PNPP00491 289 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 BGLAPP02818 100 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 CD37P11049 281 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ASPHD2Q6ICH7 369 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 LPCAT3Q6P1A2 487 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF627Q7L945 461 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 BEST3Q8N1M1 668 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ASB5Q8WWX0 329 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ST8SIA2Q92186 375 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF501Q96CX3 271 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF587Q96SQ5 575 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 NXF5Q9H1B4 397 aaKnown RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 PARD6AQ9NPB6 346 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 GPN3Q9UHW5 284 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 GTF2A1LQ9UNN4 478 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 DMXL1Q9Y485 3027 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF292O60281 2723 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 TRAV36DV7A0A075B6V5 113 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 PRSS37A4D1T9 235 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 MEGF11A6BM72 1044 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 TEX46H3BTG2 121 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 TOX3O15405 576 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 OR6A2O95222 327 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 CYB5AP00167 134 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 AMY2AP04746 511 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 SLC37A1P57057 533 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 RAB4BP61018 213 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 SRSF4Q08170 494 aaKnown RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 SGCAQ16586 387 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 GLYATL3Q5SZD4 288 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 PHF19Q5T6S3 580 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 CFAP77Q6ZQR2 320 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 TTLL10Q6ZVT0 673 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 MAMDC2Q7Z304 686 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 TMED4Q7Z7H5 227 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 MRPS24Q96EL2 167 aaKnown RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 SLC46A1Q96NT5 459 aa11.85□□□□□ -0.51
VPS4A-204ENST00000566354 DHCR7Q9UBM7 475 aaKnown RBP11.85□□□□□ -0.51
VPS4A-204ENST00000566354 PCNX2A6NKB5 2137 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 TRAV20A0A0B4J274 112 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 OR5H14A6NHG9 310 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF736B4DX44 427 aaPredicted RBP11.84□□□□□ -0.51
VPS4A-204ENST00000566354 C11orf98E9PRG8 122 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 NTN3O00634 580 aaPredicted RBP11.84□□□□□ -0.51
VPS4A-204ENST00000566354 RAD1O60671 282 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 FSTP19883 344 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 RPL27P61353 136 aaKnown RBP11.84□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF345Q14585 488 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 ELP2Q6IA86 826 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 LIN54Q6MZP7 749 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 NDUFAF7Q7L592 441 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 STEAP2Q8NFT2 490 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 OR5M8Q8NGP6 311 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 STK35Q8TDR2 534 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 PTPMT1Q8WUK0 201 aaPredicted RBP11.84□□□□□ -0.51
VPS4A-204ENST00000566354 CUTCQ9NTM9 273 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 RASL12Q9NYN1 266 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 KCNK7Q9Y2U2 307 aa11.84□□□□□ -0.51
VPS4A-204ENST00000566354 COL5A1P20908 1838 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 A0A1B0GTI1 187 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 FRG2CA6NGY1 282 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 LINC00587B1AMM8 73 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 DOK2O60496 412 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 EIF4E2O60573 245 aaKnown RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 MT-ATP6P00846 226 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 CD74P04233 296 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 IFNA4P05014 189 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 SPARCP09486 303 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 IGFBP3P17936 291 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 ACP1P24666 158 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 RORAP35398 523 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 RIDAP52758 137 aaKnown RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF117Q03924 483 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 SGCBQ16585 318 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 CCDC157Q569K6 752 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 ATPAF1Q5TC12 328 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 CATSPERDQ86XM0 798 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 GALNT16Q8N428 558 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 KCNRGQ8N5I3 272 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 OR10K1Q8NGX5 313 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 PPP1R14AQ96A00 147 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 C8orf44Q96CB5 159 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 OR6C1Q96RD1 312 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 ADOQ96SZ5 270 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 KLHDC3Q9BQ90 382 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 TINAGL1Q9GZM7 467 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM9BQ9NQ34 198 aa11.83□□□□□ -0.51
VPS4A-204ENST00000566354 MRPL22Q9NWU5 206 aaKnown RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 RPH3AQ9Y2J0 694 aaPredicted RBP11.83□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM200CA6NKL6 621 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 M0QYG6 137 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms