RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 OR8D4Q8NGM9 314 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 APOBEC3DQ96AK3 386 aaPredicted RBP9.12□□□□□ -0.95
VPS39-208ENST00000564994 MAP6Q96JE9 813 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 OR2V2Q96R30 315 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 NDE1Q9NXR1 346 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 VNN3Q9NY84 501 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 OPN4Q9UHM6 478 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 CYB5R1Q9UHQ9 305 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 PPP1R3CQ9UQK1 317 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 CDH10Q9Y6N8 788 aa9.12□□□□□ -0.95
VPS39-208ENST00000564994 B2RBV5 119 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 J3QLI3 93 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 TNFRSF11BO00300 401 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 KRT36O76013 467 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 GASTP01350 101 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 ACSM4P0C7M7 580 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 TNFRSF1AP19438 455 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 EPHA1P21709 976 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 ANOS1P23352 680 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 PYCR1P32322 319 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 RPS27P42677 84 aaKnown RBP9.11□□□□□ -0.95
VPS39-208ENST00000564994 MMP16P51512 607 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 SEC61A1P61619 476 aaKnown RBP9.11□□□□□ -0.95
VPS39-208ENST00000564994 MS4A2Q01362 244 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 ZMYND11Q15326 602 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 DCAF12L2Q5VW00 463 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 LYPD4Q6UWN0 246 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 C1QL2Q7Z5L3 287 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 PEG10Q86TG7 708 aaKnown RBP9.11□□□□□ -0.95
VPS39-208ENST00000564994 LRRC28Q86X40 367 aaPredicted RBP9.11□□□□□ -0.95
VPS39-208ENST00000564994 ATG16L2Q8NAA4 619 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 CYB561A3Q8NBI2 242 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 BHLHE23Q8NDY6 225 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 OR8G5Q8NG78 346 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 OR5L1Q8NGL2 311 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 OR10S1Q8NGN2 331 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 ZNF420Q8TAQ5 688 aaPredicted RBP9.11□□□□□ -0.95
VPS39-208ENST00000564994 MEGF10Q96KG7 1140 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 CCT8L2Q96SF2 557 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 SLC30A2Q9BRI3 323 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 C1QTNF5Q9BXJ0 243 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 TRIM15Q9C019 465 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 GCM1Q9NP62 436 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 MMP26Q9NRE1 261 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 IL20Q9NYY1 176 aa9.11□□□□□ -0.95
VPS39-208ENST00000564994 A0A0A6YYJ9 748 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 IGHV3-64DA0A0J9YX35 117 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 A0A1B0GWJ7 208 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 TVP23AA6NH52 213 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 IQCF6A8MYZ5 107 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 F5H0A9 414 aaPredicted RBP9.1□□□□□ -0.95
VPS39-208ENST00000564994 F5H5K5 113 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 TRAPPC2LH3BP13 241 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 TMEM178BH3BS89 294 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 SURF4O15260 269 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 FSHBP01225 129 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 HLA-DQA2P01906 255 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 T-ENOLP0DO92 83 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 SLC6A9P48067 706 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 BTG1P62324 171 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 TRAP1Q12931 704 aaKnown RBP9.1□□□□□ -0.95
VPS39-208ENST00000564994 GK2Q14410 553 aaPredicted RBP9.1□□□□□ -0.95
VPS39-208ENST00000564994 SLC36A3Q495N2 470 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 TMEM155Q4W5P6 130 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 LCN8Q6JVE9 175 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 RASSF6Q6ZTQ3 369 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 AQP11Q8NBQ7 271 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 OR51L1Q8NGJ5 315 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 OR13G1Q8NGZ3 307 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 OR4Q3Q8NH05 313 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 ST7LQ8TDW4 575 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 NSL1Q96IY1 281 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 ZNF582Q96NG8 517 aaPredicted RBP9.1□□□□□ -0.95
VPS39-208ENST00000564994 PITX2Q99697 317 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 ATF6BQ99941 703 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 CDADC1Q9BWV3 514 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 C7orf69Q9H7B7 122 aa9.1□□□□□ -0.95
VPS39-208ENST00000564994 PATZ1Q9HBE1 687 aaKnown RBP9.1□□□□□ -0.95
VPS39-208ENST00000564994 PPIAL4EA0A075B759 164 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 PPIAL4CA0A0B4J2A2 164 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 C5orf63A6NC05 138 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 PPIAL4DF5H284 164 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 F5H5P2 479 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 FOXH1O75593 365 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 CCNB2O95067 398 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 ZNF205O95201 554 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 CYB5R3P00387 301 aaPredicted RBP9.09□□□□□ -0.95
VPS39-208ENST00000564994 HLA-DPB1P04440 258 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 PPIAL4FP0DN26 164 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 SELEP16581 610 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 GATA3P23771 443 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 PMELP40967 661 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 MNAT1P51948 309 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 ECH1Q13011 328 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 TRIM25Q14258 630 aaKnown RBP9.09□□□□□ -0.95
VPS39-208ENST00000564994 RPL13AP3Q6NVV1 102 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 SLC27A4Q6P1M0 643 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 KLHL36Q8N4N3 616 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 LINC00471Q8N535 108 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 SPICQ8N5J4 248 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms