RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CRIP3Q6Q6R5 217 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4L9Q6RFH8 374 aaPredicted RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 PGAM4Q8N0Y7 254 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ZFP82Q8N141 532 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CCNYL1Q8N7R7 359 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF738Q8NE65 137 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 OR4K2Q8NGD2 314 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 OR2Y1Q8NGV0 311 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 OR51F2Q8NH61 342 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC7A13Q8TCU3 470 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ZPLD1Q8TCW7 415 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 UFD1Q92890 307 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 MAGOHBQ96A72 148 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 SCMH1Q96GD3 660 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 SERPINB12Q96P63 405 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 PAPOLGQ9BWT3 736 aaKnown RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ADGRL4Q9HBW9 690 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ISYNA1Q9NPH2 558 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 C1orf109Q9NX04 203 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CD274Q9NZQ7 290 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IL36RNQ9UBH0 155 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 DUX4Q9UBX2 424 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 RSPH14Q9UHP6 348 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 ING1Q9UK53 422 aaPredicted RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 POLR3HQ9Y535 204 aaPredicted RBP4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 CKAP5Q14008 2032 aa4.38□□□□□ -1.71
VPS35P1-201ENST00000563400 IGLV9-49A0A0B4J1Y8 123 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SAGE2PA6NJ88 616 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 MPDU1O75352 247 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 CDK2AP2O75956 126 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SEMA4FO95754 770 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 TTC4O95801 387 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 FGF1P05230 155 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 IL6P05231 212 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 CD70P32970 193 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 VHLP40337 213 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 CDKN2BP42772 138 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 DAP3P51398 398 aaKnown RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 DYNLT1P63172 113 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 RPL24P83731 157 aaKnown RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 DHODHQ02127 395 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF85Q03923 595 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SRSF9Q13242 221 aaKnown RBP eCLIP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 NDUFA9Q16795 377 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 RFTN2Q52LD8 501 aaPredicted RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 FAM120AOSQ5T036 256 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 TRNP1Q6NT89 227 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 CERS6Q6ZMG9 384 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 STAC2Q6ZMT1 411 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 ZFAND4Q86XD8 727 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC13A5Q86YT5 568 aaPredicted RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 HIPK1Q86Z02 1210 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 HS3ST5Q8IZT8 346 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 PDIK1LQ8N165 341 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 RAB42Q8N4Z0 105 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SEMA6DQ8NFY4 1073 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 OR5T2Q8NGG2 359 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SPPL2AQ8TCT8 520 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 APOBEC4Q8WW27 367 aaKnown RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 LINC00476Q8WZB0 136 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 RAD51AP1Q96B01 352 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 CREB3L1Q96BA8 519 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 OMA1Q96E52 524 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 WDR34Q96EX3 536 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 DCUN1D1Q96GG9 259 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 ATF6BQ99941 703 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF747Q9BV97 191 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 Q9HAA7 133 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 PLEKHA3Q9HB20 300 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 KRCC1Q9NPI7 259 aaPredicted RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 TAS2R16Q9NYV7 291 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 RALYQ9UKM9 306 aaKnown RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 ICAM5Q9UMF0 924 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 SNX12Q9UMY4 172 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 WIF1Q9Y5W5 379 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 NUP210Q8TEM1 1887 aaPredicted RBP4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 PLXNA3P51805 1871 aa4.37□□□□□ -1.71
VPS35P1-201ENST00000563400 hCG_1818297A0A087WSY0 165 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 A0A1B0GVT2 93 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 A0A1W2PQL4 384 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PSMB11A5LHX3 300 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF587BE7ETH6 402 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 DCTN6O00399 190 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RBMXL2O75526 392 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 IGLV3-19P01714 112 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CTSEP14091 401 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 LEPP41159 167 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MAGEA3P43357 314 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RANBP1P43487 201 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR3A2P47893 321 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GSSP48637 474 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SERPINB8P50452 374 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 FUT6P51993 359 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MAGOHP61326 146 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MRPS25P82663 173 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM187Q14656 261 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CD226Q15762 336 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 DGUOKQ16854 277 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PIGGQ5H8A4 983 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CEP85LQ5SZL2 805 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms