RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CRMP1Q14194 572 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 OR2T2Q6IF00 324 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 ZNF771Q7L3S4 317 aaPredicted RBP13.28□□□□□ -0.28
VPS39-203ENST00000561797 NAA40Q86UY6 237 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 OR2T33Q8NG76 320 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 RAB1CQ92928 201 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 TIMD4Q96H15 378 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 ATF6BQ99941 703 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 WDR76Q9H967 626 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 TMEFF2Q9UIK5 374 aaPredicted RBP13.28□□□□□ -0.28
VPS39-203ENST00000561797 WIPI2Q9Y4P8 454 aa13.28□□□□□ -0.28
VPS39-203ENST00000561797 H3BN98 237 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 J3QW42 95 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 DNAJC8O75937 253 aaPredicted RBP13.27□□□□□ -0.29
VPS39-203ENST00000561797 CD55P08174 381 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 ACSM4P0C7M7 580 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 TNFSF4P23510 183 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 DVL1P1P54792 670 aaPredicted RBP13.27□□□□□ -0.29
VPS39-203ENST00000561797 ECH1Q13011 328 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 FBXW12Q6X9E4 464 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 GLCCI1Q86VQ1 547 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 IQCF1Q8N6M8 205 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 ATG16L2Q8NAA4 619 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 ZNF511Q8NB15 262 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 TEX47Q8TBZ9 253 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 ITLN1Q8WWA0 313 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 MAP6Q96JE9 813 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 RBM4Q9BWF3 364 aaKnown RBP13.27□□□□□ -0.29
VPS39-203ENST00000561797 PNRC2Q9NPJ4 139 aaKnown RBP13.27□□□□□ -0.29
VPS39-203ENST00000561797 PDP1Q9P0J1 537 aaPredicted RBP13.27□□□□□ -0.29
VPS39-203ENST00000561797 KCNG2Q9UJ96 466 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 POMPQ9Y244 141 aa13.27□□□□□ -0.29
VPS39-203ENST00000561797 ISPDA4D126 451 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 RIIAD1A6NNX1 92 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 E2F6O75461 281 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 IFNGP01579 166 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 LCATP04180 440 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 SPARCP09486 303 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 CLUP10909 449 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 PSKH1P11801 424 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 SPI1P17947 270 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 POU1F1P28069 291 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 FMO3P31513 532 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 PRSS12P56730 875 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 CBX1P83916 185 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 GK3PQ14409 553 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 CD300LDQ6UXZ3 194 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 HS3ST5Q8IZT8 346 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 BHLHE23Q8NDY6 225 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 OR10S1Q8NGN2 331 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 OTULINQ96BN8 352 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 ZNF665Q9H7R5 613 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 MED20Q9H944 212 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 DCAF16Q9NXF7 216 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 COMMD3-BMI1R4GMX3 469 aa13.26□□□□□ -0.29
VPS39-203ENST00000561797 ANK3Q12955 4377 aaKnown RBP13.25□□□□□ -0.29
VPS39-203ENST00000561797 ZNF593O00488 134 aaPredicted RBP13.25□□□□□ -0.29
VPS39-203ENST00000561797 GSC2O15499 205 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 FKBP6O75344 327 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 MSMBP08118 114 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 TNFRSF1AP19438 455 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 PRKACGP22612 351 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 GRK5P34947 590 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 SLC25A1P53007 311 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 TPTEP56180 551 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 SLC3A1Q07837 685 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 KRTAP27-1Q3LI81 207 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 COLCA1Q6ZS62 124 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 DCXRQ7Z4W1 244 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 PEG10Q86TG7 708 aaKnown RBP13.25□□□□□ -0.29
VPS39-203ENST00000561797 OR8G5Q8NG78 346 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 OR6K6Q8NGW6 343 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 TMEM186Q96B77 213 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 RAB39BQ96DA2 213 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 ZNF582Q96NG8 517 aaPredicted RBP13.25□□□□□ -0.29
VPS39-203ENST00000561797 GAL3ST1Q99999 423 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 HCAR1Q9BXC0 346 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 C1QTNF5Q9BXJ0 243 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 CADM1Q9BY67 442 aaKnown RBP13.25□□□□□ -0.29
VPS39-203ENST00000561797 NMNAT2Q9BZQ4 307 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 YY1AP1Q9H869 796 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 HIF1ANQ9NWT6 349 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 DOCK11Q5JSL3 2073 aa13.25□□□□□ -0.29
VPS39-203ENST00000561797 WNK2Q9Y3S1 2297 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 TCRBV3S1A0A5B6 114 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ARRDC5A6NEK1 342 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 FAM183AA6NL82 134 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 H0YL77 283 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 M0R135 149 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 SURF4O15260 269 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 SBK2P0C263 348 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ZNF3P17036 446 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 HOXB6P17509 224 aaKnown RBP13.24□□□□□ -0.29
VPS39-203ENST00000561797 SRP14P37108 136 aaKnown RBP13.24□□□□□ -0.29
VPS39-203ENST00000561797 SLC6A9P48067 706 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ENTPD1P49961 510 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 BNIP1Q12981 228 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 TAF13Q15543 124 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ACSM5Q6NUN0 579 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 OR10AD1Q8NGE0 317 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms