RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RSPO1Q2MKA7 263 aaPredicted RBP9.75□□□□□ -0.85
USP3-220ENST00000561381 ESCO2Q56NI9 601 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 FBXW12Q6X9E4 464 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 RBMS3Q6XE24 437 aaKnown RBP9.75□□□□□ -0.85
USP3-220ENST00000561381 BHLHE23Q8NDY6 225 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 OR8G5Q8NG78 346 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 C7orf34Q96L11 122 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 COG8Q96MW5 612 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 FUZQ9BT04 418 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 MRI1Q9BV20 369 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 NDEL1Q9GZM8 345 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 CCDC134Q9H6E4 229 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 EFCAB1Q9HAE3 211 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 TMEM165Q9HC07 324 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 OR5V1Q9UGF6 321 aa9.75□□□□□ -0.85
USP3-220ENST00000561381 IGLV1-36A0A0B4J1U3 117 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 UNC119BA6NIH7 251 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 F5H5P2 479 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 TMPRSS2O15393 492 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 TXNDC12O95881 172 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 HLA-DPB1P04440 258 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 IGHV4-38-2P0DP08 117 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 RHCEP18577 417 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 PMELP40967 661 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 GSK3AP49840 483 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 HIST1H3AP68431 136 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 HOXA4Q00056 320 aaPredicted RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 PAX2Q02962 417 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 HIST2H3PS2Q5TEC6 136 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 DPY19L2P2Q6ZN68 376 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 CFAP77Q6ZQR2 320 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 HIST2H3AQ71DI3 136 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 ADCK1Q86TW2 530 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 MOGAT3Q86VF5 341 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 LINC00346Q8IVM7 164 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 OR6V1Q8N148 313 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 OR13G1Q8NGZ3 307 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 APOBEC3DQ96AK3 386 aaPredicted RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 ZNF582Q96NG8 517 aaPredicted RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 ERMAPQ96PL5 475 aaPredicted RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 SLC30A2Q9BRI3 323 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 SSBP3Q9BWW4 388 aaPredicted RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 SRA1Q9HD15 236 aaKnown RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 ABCD2Q9UBJ2 740 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 ATPIF1Q9UII2 106 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 RPS6KA6Q9UK32 745 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 B9D1Q9UPM9 204 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 AURKCQ9UQB9 309 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 FAM32AQ9Y421 112 aaKnown RBP9.74□□□□□ -0.85
USP3-220ENST00000561381 V9GYQ6 96 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 DOCK11Q5JSL3 2073 aa9.74□□□□□ -0.85
USP3-220ENST00000561381 MGAM2Q2M2H8 2515 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 IQCF6A8MYZ5 107 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 J3QW42 95 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 KCNAB3O43448 404 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 CCDC22O60826 627 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 RPS2P15880 293 aaKnown RBP9.73□□□□□ -0.85
USP3-220ENST00000561381 RGS6P49758 472 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 RPS6KA3P51812 740 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 PSME3P61289 254 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 FOXL1Q12952 345 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 BAMBIQ13145 260 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 GLYATQ6IB77 296 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 SLC27A4Q6P1M0 643 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 LEG1Q6P5S2 330 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 SMARCD3Q6STE5 483 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 HACD2Q6Y1H2 254 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 NAA40Q86UY6 237 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 KLBQ86Z14 1044 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 MUC20Q8N307 709 aaPredicted RBP9.73□□□□□ -0.85
USP3-220ENST00000561381 RNF148Q8N7C7 305 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 C19orf18Q8NEA5 215 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 GJC3Q8NFK1 279 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 OR52E2Q8NGJ4 325 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 OR5L1Q8NGL2 311 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 DHRS1Q96LJ7 313 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 NMNAT3Q96T66 252 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 COQ7Q99807 217 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 TMEM246Q9BRR3 403 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 ZNF747Q9BV97 191 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 MS4A7Q9GZW8 240 aaPredicted RBP9.73□□□□□ -0.85
USP3-220ENST00000561381 HDHD2Q9H0R4 259 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 FN3KQ9H479 309 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 DCAF13Q9NV06 445 aaKnown RBP9.73□□□□□ -0.85
USP3-220ENST00000561381 LRCH1Q9Y2L9 728 aa9.73□□□□□ -0.85
USP3-220ENST00000561381 IGHV2-70DA0A0C4DH43 119 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 MDFIC2A0A1B0GVS7 189 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 ACSM4P0C7M7 580 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 HIST1H1CP16403 213 aaKnown RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 CRABP1P29762 137 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 MDH1P40925 334 aaKnown RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 SRP9P49458 86 aaKnown RBP9.72□□□□□ -0.85
USP3-220ENST00000561381 GNB2P62879 340 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 COX10Q12887 443 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 MAB21L1Q13394 359 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 SLC9A3R2Q15599 337 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 KRTAP27-1Q3LI81 207 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 SLC18B1Q6NT16 456 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 LYPD2Q6UXB3 125 aa9.72□□□□□ -0.85
USP3-220ENST00000561381 COLCA1Q6ZS62 124 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms