RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 MST1LQ2TV78 715 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 C11orf71Q6IPW1 123 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 THAP5Q7Z6K1 395 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 OR10H4Q8NGA5 316 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 SLC25A40Q8TBP6 338 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 OR8B4Q96RC9 309 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 MNTQ99583 582 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 C1QTNF5Q9BXJ0 243 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 ANKRD60Q9BZ19 345 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 MRPL37Q9BZE1 423 aaKnown RBP18.72■□□□□ 0.59
SNX1-210ENST00000560260 BCL2L14Q9BZR8 327 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 TBCCD1Q9NVR7 557 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 MYEF2Q9P2K5 600 aaKnown RBP18.72■□□□□ 0.59
SNX1-210ENST00000560260 EIF3KQ9UBQ5 218 aaKnown RBP18.72■□□□□ 0.59
SNX1-210ENST00000560260 ST6GALNAC2Q9UJ37 374 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 STARD10Q9Y365 291 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 LRP12Q9Y561 859 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 TMEM14AQ9Y6G1 99 aa18.72■□□□□ 0.59
SNX1-210ENST00000560260 DSCAMO60469 2012 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 TMEM129A0AVI4 362 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 ZNF670-ZNF695F2Z2N8 137 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 H2BFMP0C1H6 154 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 OR2T7P0C7T2 308 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 SLC2A1P11166 492 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 MPV17P39210 176 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 RAD52P43351 418 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 SLC15A1P46059 708 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 HSPA13P48723 471 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 CX3CR1P49238 355 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 RPS23P62266 143 aaKnown RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 GRB2P62993 217 aaKnown RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 ROM1Q03395 351 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 TAF13Q15543 124 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 RGS7BPQ6MZT1 257 aaPredicted RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 ZNF322Q6U7Q0 402 aaPredicted RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 PRSS45Q7RTY3 260 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 MUC15Q8N387 334 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 OR2T27Q8NH04 317 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 SPTSSAQ969W0 71 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 MRPL24Q96A35 216 aaKnown RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 MARS2Q96GW9 593 aaKnown RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 MRPS18AQ9NVS2 196 aaKnown RBP18.71■□□□□ 0.59
SNX1-210ENST00000560260 LAMP3Q9UQV4 416 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 MYRFQ9Y2G1 1151 aa18.71■□□□□ 0.59
SNX1-210ENST00000560260 SNTNA6NMZ2 147 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 MYF6P23409 242 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 ATP6V1E1P36543 226 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 TPTEP56180 551 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 SNCBQ16143 134 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 SNAI3Q3KNW1 292 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 RHOUQ7L0Q8 258 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 KRT77Q7Z794 578 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 FBXL14Q8N1E6 418 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 ZNF283Q8N7M2 679 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 OR52I1Q8NGK6 324 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 ASB17Q8WXJ9 295 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 SYT3Q9BQG1 590 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 OR2J1Q9GZK6 312 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 ELOVL3Q9HB03 270 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 MRM2Q9UI43 246 aaKnown RBP18.7■□□□□ 0.58
SNX1-210ENST00000560260 RPL36Q9Y3U8 105 aaKnown RBP18.7■□□□□ 0.58
SNX1-210ENST00000560260 CMAHPQ9Y471 501 aa18.7■□□□□ 0.58
SNX1-210ENST00000560260 CLPTM1O96005 669 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 RAF1P04049 648 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 HSD11B1P28845 292 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 SERPINF1P36955 418 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 SLC6A9P48067 706 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 RGS6P49758 472 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 EFNB3Q15768 340 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 SWI5Q1ZZU3 235 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 ZNF684Q5T5D7 378 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 DRAM2Q6UX65 266 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 PLEKHG7Q6ZR37 379 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 IPCEF1Q8WWN9 437 aaPredicted RBP18.69■□□□□ 0.58
SNX1-210ENST00000560260 DOK1Q99704 481 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 CCL19Q99731 98 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 CBLN4Q9NTU7 201 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 IKZF2Q9UKS7 526 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 PCDHGB5Q9Y5G0 923 aa18.69■□□□□ 0.58
SNX1-210ENST00000560260 PHYHO14832 338 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 XPNPEP2O43895 674 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 IGHA1P01876 353 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 LCATP04180 440 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 ZNF250P15622 560 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 ZNF121P58317 390 aaPredicted RBP18.68■□□□□ 0.58
SNX1-210ENST00000560260 RAB40BQ12829 278 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 AGAP6Q5VW22 663 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 KCTD18Q6PI47 426 aaPredicted RBP18.68■□□□□ 0.58
SNX1-210ENST00000560260 ARL9Q6T311 187 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 CDH24Q86UP0 819 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 ZNF679Q8IYX0 411 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 KLF14Q8TD94 323 aaPredicted RBP18.68■□□□□ 0.58
SNX1-210ENST00000560260 APOBEC3DQ96AK3 386 aaPredicted RBP18.68■□□□□ 0.58
SNX1-210ENST00000560260 ZNF184Q99676 751 aaPredicted RBP18.68■□□□□ 0.58
SNX1-210ENST00000560260 ZNF649Q9BS31 505 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 PLK3Q9H4B4 646 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 PTTG3PQ9NZH4 202 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 RAB26Q9ULW5 256 aa18.68■□□□□ 0.58
SNX1-210ENST00000560260 ANKRD17O75179 2603 aaKnown RBP18.67■□□□□ 0.58
SNX1-210ENST00000560260 IGLV3-9A0A075B6K5 115 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms