RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TPSB2P20231 275 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ATP6V1B2P21281 511 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MYL9P24844 172 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 S100PP25815 95 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ELK4P28324 431 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SFNP31947 248 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RORAP35398 523 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SOX6P35712 828 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TGFBR2P37173 567 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 EIF1P41567 113 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CDKN2BP42772 138 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ACOT2P49753 483 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SMSP52788 366 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HSPA2P54652 639 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NAPAP54920 295 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 AIF1P55008 147 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 DNAJB13P59910 316 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SNAP25P60880 206 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RAB4BP61018 213 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SLC35A2P78381 396 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 GTF2BQ00403 316 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 LRRC74AQ0VAA2 488 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MAB21L1Q13394 359 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 UNC119Q13432 240 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 PIGHQ14442 188 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 PON2Q15165 354 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TPSAB1Q15661 275 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CARTPTQ16568 116 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MICBQ29980 383 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 HFEQ30201 348 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 BCL7AQ4VC05 210 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SPANXN2Q5MJ10 180 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM236Q5W0B7 351 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 LRRC66Q68CR7 880 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 LAIR2Q6ISS4 152 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C5orf46Q6UWT4 87 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 UNC5DQ6UXZ4 953 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ZCCHC23Q6ZST2 131 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 FAM183BPQ6ZVS7 135 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF720Q7Z2F6 126 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 EFL1Q7Z2Z2 1120 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C16orf62Q7Z3J2 963 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 LHFPL3Q86UP9 236 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 COMMD7Q86VX2 200 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 FAM9CQ8IZT9 166 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 STPG2Q8N412 459 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C9orf62Q8N4C0 152 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 YIPF7Q8N8F6 280 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C12orf29Q8N999 325 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CCNYQ8ND76 341 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 OR52E4Q8NGH9 312 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MAGEE2Q8TD90 523 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ELMO1Q92556 727 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MYLPFQ96A32 169 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RAB7BQ96AH8 199 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TUBGCP3Q96CW5 907 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MSANTD3Q96H12 275 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TSGA13Q96PP4 275 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 RIT2Q99578 217 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NPAS2Q99743 824 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF251Q9BRH9 671 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SLC30A2Q9BRI3 323 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SEC22CQ9BRL7 303 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NAT9Q9BTE0 207 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 REG4Q9BYZ8 158 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 BCL2L14Q9BZR8 327 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM117Q9H0C3 514 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 DCSTAMPQ9H295 470 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 OR51M1Q9H341 326 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 INPP5EQ9NRR6 644 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 AGPAT3Q9NRZ7 376 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 IMP3Q9NV31 184 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MCUBQ9NWR8 336 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 SCN3BQ9NY72 215 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CTSFQ9UBX1 484 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 NUFIP1Q9UHK0 495 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CYB5R1Q9UHQ9 305 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ING4Q9UNL4 249 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 AURKCQ9UQB9 309 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 ENTPD4Q9Y227 616 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MRPS7Q9Y2R9 242 aaKnown RBP2.24□□□□□ -2.05
VPS13C-208ENST00000559119 CBY1Q9Y3M2 126 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MFHAS1Q9Y4C4 1052 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 C5P01031 1676 aa2.24□□□□□ -2.05
VPS13C-208ENST00000559119 MAST2Q6P0Q8 1798 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ARFGEF2Q9Y6D5 1785 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ARAP2Q8WZ64 1704 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 PTPRFP10586 1907 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TANC1Q9C0D5 1861 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 LOC100130705A0A1B0GUX0 176 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 FAM92AA1XBS5 289 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 NKX2-6A6NCS4 301 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C5orf51A6NDU8 294 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF729A6NN14 1252 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 E5RI56 91 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 H7C2Y5 167 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 DNASE2O00115 360 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SLC28A1O00337 649 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SDHDO14521 159 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 PRMT5O14744 637 aaPredicted RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms