RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 H3BML4 177 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 CD2P06729 351 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 HOXB5P09067 269 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 RNH1P13489 461 aaKnown RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 CD1CP29017 333 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 CAPZA2P47755 286 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 PNLIPRP2P54317 469 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 RASGEF1BQ0VAM2 473 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 AIMP2Q13155 320 aaKnown RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 INPP5JQ15735 1006 aaPredicted RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 TTLL10Q6ZVT0 673 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 ZNF101Q8IZC7 436 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 ZSCAN4Q8NAM6 433 aaPredicted RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 SEMA6DQ8NFY4 1073 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 OR5AP2Q8NGF4 316 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 ZNF587Q96SQ5 575 aaPredicted RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 NUDT9Q9BW91 350 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 ZNF275Q9NSD4 429 aaPredicted RBP11.04□□□□□ -0.64
LDLR-205ENST00000557933 VDAC3Q9Y277 283 aa11.04□□□□□ -0.64
LDLR-205ENST00000557933 ABCA7Q8IZY2 2146 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 TNFSF14O43557 240 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 MYF5P13349 255 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ADH6P28332 368 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 LTBRP36941 435 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 SNRPEP62304 92 aaKnown RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 PDZK1IP1Q13113 114 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 EBPQ15125 230 aaKnown RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 VWA2Q5GFL6 755 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ZNF585AQ6P3V2 769 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ACOT7LQ6ZUV0 252 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ZNF679Q8IYX0 411 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 PNLDC1Q8NA58 520 aaKnown RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 TMEM104Q8NE00 496 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 RXFP4Q8TDU9 374 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 FOXRED1Q96CU9 486 aaPredicted RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 TGM7Q96PF1 710 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 EDARQ9UNE0 448 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 KCNK7Q9Y2U2 307 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 TRBV23-1A0A0A0MS06 115 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 IFNA6P05013 189 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 NAT2P11245 290 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 NTSR1P30989 418 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 RIDAP52758 137 aaKnown RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 UNC119Q13432 240 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 C1orf189Q5VU69 101 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 LCN10Q6JVE6 187 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 OR4K17Q8NGC6 315 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ADAMTS18Q8TE60 1221 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 ARL5BQ96KC2 179 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 MRGPRX1Q96LB2 322 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 PRMT8Q9NR22 394 aaPredicted RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 UPB1Q9UBR1 384 aa11.03□□□□□ -0.64
LDLR-205ENST00000557933 MRPS33Q9Y291 106 aaKnown RBP11.03□□□□□ -0.64
LDLR-205ENST00000557933 A0A0D9SG52 128 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 C9JQL5 133 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 KNG1P01042 644 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 SFTPBP07988 381 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 ABOP16442 354 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 SLC18B1Q6NT16 456 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 TMEM92Q6UXU6 159 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 DNM1P46Q6ZS02 220 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 ADGRE4PQ86SQ3 457 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 ZSCAN1Q8NBB4 408 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 UBQLN4Q9NRR5 601 aa11.02□□□□□ -0.64
LDLR-205ENST00000557933 ZNF629Q9UEG4 869 aaPredicted RBP11.02□□□□□ -0.64
LDLR-205ENST00000557933 PRSS37A4D1T9 235 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 MPIG6BO95866 241 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 CTSEP14091 401 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 ZBTB25P24278 435 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 RAB13P51153 203 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 FLI1Q01543 452 aaPredicted RBP11.02□□□□□ -0.65
LDLR-205ENST00000557933 ZNF615Q8N8J6 731 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 ADAT3Q96EY9 351 aaPredicted RBP11.02□□□□□ -0.65
LDLR-205ENST00000557933 TMEM41AQ96HV5 264 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 RSRP1Q9BUV0 290 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 ST6GALNAC5Q9BVH7 336 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 RAB27BO00194 218 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 CLDN4O14493 209 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 AGTR1P30556 359 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 CD80P33681 288 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 EFNA3P52797 238 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 SLC25A1P53007 311 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 CARD17Q5XLA6 110 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 LYG2Q86SG7 212 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 SVBPQ8N300 66 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 PHB2Q99623 299 aa11.02□□□□□ -0.65
LDLR-205ENST00000557933 GDF2Q9UK05 429 aaPredicted RBP11.02□□□□□ -0.65
LDLR-205ENST00000557933 LOC400499M0QZD8 3231 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 A0A1B0GTI1 187 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 SOCS1O15524 211 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 ZNF806P0C7X5 589 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 MUC1P15941 1255 aaPredicted RBP11.01□□□□□ -0.65
LDLR-205ENST00000557933 BCKDHBP21953 392 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 DRAM2Q6UX65 266 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 PAQR4Q8N4S7 273 aaPredicted RBP11.01□□□□□ -0.65
LDLR-205ENST00000557933 SPSB2Q99619 263 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 FANCFQ9NPI8 374 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 LINC00587B1AMM8 73 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 ZNF354AO60765 605 aaPredicted RBP11.01□□□□□ -0.65
LDLR-205ENST00000557933 ZNF217O75362 1048 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms