RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 CLEC9AQ6UXN8 241 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 CPOQ8IVL8 374 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 ZNF511Q8NB15 262 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 PTP4A1Q93096 173 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 SLAMF6Q96DU3 332 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 ELMOD3Q96FG2 381 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 MAP6Q96JE9 813 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 MNTQ99583 582 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 C9orf16Q9BUW7 83 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 OR51V1Q9H2C8 321 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 SEMA6AQ9H2E6 1030 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 WDR76Q9H967 626 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 SAP30LQ9HAJ7 183 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 DECR2Q9NUI1 292 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 TVP23BQ9NYZ1 205 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 USE1Q9NZ43 259 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 PURGQ9UJV8 347 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 TMEM14AQ9Y6G1 99 aa12.29□□□□□ -0.44
CCDC88C-207ENST00000554051 SAC3D1A6NKF1 404 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 VWC2LB2RUY7 222 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 F5H5K5 113 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 H3BNX3 289 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 CD55P08174 381 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 DBHP09172 617 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 NAT2P11245 290 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 USF1P22415 310 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 HSD11B1P28845 292 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 MPV17P39210 176 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 NR4A2P43354 598 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 SLC6A9P48067 706 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 GABPB1Q06547 395 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 EIF2B1Q14232 305 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 GGTLC2Q14390 218 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 CARTPTQ16568 116 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 NXNL2Q5VZ03 156 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 OTPQ5XKR4 325 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 TIGD4Q8IY51 512 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 ST7LQ8TDW4 575 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 RNF133Q8WVZ7 376 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 SLC7A6Q92536 515 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 HAVCR1Q96D42 359 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 KCNJ15Q99712 375 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 NIPAL2Q9H841 368 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 S100A14Q9HCY8 104 aa12.28□□□□□ -0.44
CCDC88C-207ENST00000554051 PHYHO14832 338 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SMAD7O15105 426 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 TPD52L2O43399 206 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 XRCC2O43543 280 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 LCATP04180 440 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 LYNP07948 512 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 TNFRSF1AP19438 455 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC2A5P22732 501 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 CFL1P23528 166 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 ALDH3A2P51648 485 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 RIPPLY3P57055 190 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 CDC42P60953 191 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC3A1Q07837 685 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 PSG7Q13046 419 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SNCBQ16143 134 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 LYPD4Q6UWN0 246 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC16A9Q7RTY1 509 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 MRPL21Q7Z2W9 205 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 PQLC1Q8N2U9 271 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 OR52H1Q8NGJ2 320 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 OTOSQ8NHW6 89 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM163Q8TC26 289 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 CNN2Q99439 309 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 PKP2Q99959 881 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 YIPF3Q9GZM5 350 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 SLC22A4Q9H015 551 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 RIBC2Q9H4K1 309 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 RGCCQ9H4X1 137 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 MED20Q9H944 212 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 C8orf4Q9NR00 106 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 H2AFY2Q9P0M6 372 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEFF2Q9UIK5 374 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 STARD10Q9Y365 291 aa12.27□□□□□ -0.45
CCDC88C-207ENST00000554051 A0A096LNT2 108 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 IGHV1-69-2A0A0G2JMI3 117 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 IFNL4K9M1U5 179 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 EI24O14681 340 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 MITFO75030 526 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 LY6HO94772 140 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 IGHV1-46P01743 117 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ALPLP05186 524 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 CHN2P52757 468 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM33P57088 247 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 POU4F2Q12837 409 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 APOFQ13790 326 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZSCAN26Q16670 478 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 TMEM236Q5W0B7 351 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 KCTD18Q6PI47 426 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 DEGS2Q6QHC5 323 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 DPY19L4Q7Z388 723 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 CIARTQ8N365 385 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 OR10S1Q8NGN2 331 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 OR8J1Q8NGP2 316 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ZNRF4Q8WWF5 429 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 ASB17Q8WXJ9 295 aa12.26□□□□□ -0.45
CCDC88C-207ENST00000554051 HPS1Q92902 700 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms