RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CDK5R1Q15078 307 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 TRAM1Q15629 374 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 TAB1Q15750 504 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 KRTAP27-1Q3LI81 207 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 BCL2L15Q5TBC7 163 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 XAF1Q6GPH4 301 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 TMEM108Q6UXF1 575 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 TUBA1AQ71U36 451 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 SPATC1Q76KD6 591 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 FGFBP3Q8TAT2 258 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 GATAD2BQ8WXI9 593 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 ITFG2Q969R8 447 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 SMIM19Q96E16 107 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 OR5M11Q96RB7 305 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 OPA3Q9H6K4 179 aa12.62□□□□□ -0.39
SHMT2-210ENST00000553950 ISG20L2Q9H9L3 353 aaKnown RBP12.62□□□□□ -0.39
SHMT2-210ENST00000553950 NUFIP1Q9UHK0 495 aaKnown RBP12.62□□□□□ -0.39
SHMT2-210ENST00000553950 SMG1Q96Q15 3661 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF503-AS2A6NEH8 195 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 PRR32B1ATL7 298 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 F5H5K5 113 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 PSMD9O00233 223 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 CCRL2O00421 344 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 GPRIN2O60269 458 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 RPP14O95059 124 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 ANXA2P07355 339 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 CFL1P23528 166 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 APEX1P27695 318 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 TFF3Q07654 80 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 TIMM50Q3ZCQ8 353 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 SEZ6L2Q6UXD5 910 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF704Q6ZNC4 412 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 GPR141Q7Z602 305 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 CCDC54Q8NEL0 328 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 C4orf45Q96LM5 186 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 RGCCQ9H4X1 137 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 NOX3Q9HBY0 568 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 FAM206AQ9NX38 181 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 EIF3KQ9UBQ5 218 aaKnown RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 GTF2A1LQ9UNN4 478 aa12.61□□□□□ -0.39
SHMT2-210ENST00000553950 KLF2Q9Y5W3 355 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-210ENST00000553950 TRBV2A0A0J9YWF9 115 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 C5orf49A4QMS7 147 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 J3QKU1 62 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 XRCC2O43543 280 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ICMTO60725 284 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 CRYAAP02489 173 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ACSM4P0C7M7 580 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 EPXP11678 715 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 CPEP16870 476 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF12P17014 697 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 TUBG1P23258 451 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 PCSK6P29122 969 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 PRKXP51817 358 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF121P58317 390 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-210ENST00000553950 GALK2Q01415 458 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 TPBGQ13641 420 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ALKBH1Q13686 389 aaKnown RBP12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ARMCX4Q5H9R4 360 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF584Q8IVC4 421 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 OR5L1Q8NGL2 311 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 OR2G2Q8NGZ5 317 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 RPS4Y2Q8TD47 263 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 APOBEC3DQ96AK3 386 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-210ENST00000553950 PGAM5Q96HS1 289 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 POM121L2Q96KW2 1035 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF75AQ96N20 296 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 DACH2Q96NX9 599 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 OPALINQ96PE5 141 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 OR10A2Q9H208 303 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 HEATR1Q9H583 2144 aaKnown RBP12.6□□□□□ -0.39
SHMT2-210ENST00000553950 TUBG2Q9NRH3 451 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 SPEF1Q9Y4P9 236 aa12.6□□□□□ -0.39
SHMT2-210ENST00000553950 A0A1W2PR80 420 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 TUBAL3A6NHL2 446 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 H3BSA7 217 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 OGG1O15527 345 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 PLPP2O43688 288 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 SRSF10O75494 262 aaKnown RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 GOSR1O95249 250 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 SERPINA3P01011 423 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 TFAP2AP05549 437 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 CECR9P0C854 216 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 PLA2G2AP14555 144 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 PTAFRP25105 342 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 GABRA5P31644 462 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 ALDH3B2P48448 385 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 RPS23P62266 143 aaKnown RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 MALLQ13021 153 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 BLMHQ13867 455 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 DMKNQ6E0U4 476 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 CATSPERDQ86XM0 798 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 MS4A15Q8N5U1 240 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 ZNF676Q8N7Q3 588 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 CPEB3Q8NE35 698 aaKnown RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 OR5AK2Q8NH90 309 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 SSC4DQ8WTU2 575 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 C1QTNF5Q9BXJ0 243 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 ESRP2Q9H6T0 727 aaKnown RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 TBCCD1Q9NVR7 557 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms