RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KCTD18Q6PI47 426 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF813Q6ZN06 617 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 KCTD9Q7L273 389 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OOSP2Q86WS3 158 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 LINC00346Q8IVM7 164 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 SVBPQ8N300 66 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR2I1PQ8NGU4 316 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PAQR8Q8TEZ7 354 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MITD1Q8WV92 249 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 METTL21AQ8WXB1 218 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 TSLPQ969D9 159 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PTX4Q96A99 478 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MMABQ96EY8 250 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MAP3K3Q99759 626 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PRRT1Q99946 306 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 RNF126Q9BV68 326 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR11A1Q9GZK7 315 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 IGFLR1Q9H665 355 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CNTD2Q9H8S5 307 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CYTL1Q9NRR1 136 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 SLC2A8Q9NY64 477 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PRODH2Q9UF12 536 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 GDF2Q9UK05 429 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 COA3Q9Y2R0 106 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MED12Q93074 2177 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 LOC390937A0A1W2PQ73 354 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MSGN1A6NI15 193 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 DBX1A6NMT0 343 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 P2RY10O00398 339 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 XKRYO14609 159 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 HCRTR2O43614 444 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 NUDT21O43809 227 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 SSX5O60225 188 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF217O75362 1048 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 STK17BO94768 372 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CRHP06850 196 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FAM157CP0CG43 387 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 GNB3P16520 340 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 AKR1C4P17516 323 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ANOS1P23352 680 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MPZP25189 248 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 HRH1P35367 487 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 RORAP35398 523 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PRKXP51817 358 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 RIDAP52758 137 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 RPL27P61353 136 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 IL13RA1P78552 427 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 HHEXQ03014 270 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZP2Q05996 745 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 SCRN3Q0VDG4 424 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MST1LQ2TV78 715 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF528Q3MIS6 628 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 RNASE10Q5GAN6 216 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 C1orf100Q5SVJ3 147 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FBXO46Q6PJ61 603 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 TRAPPC6BQ86SZ2 158 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF584Q8IVC4 421 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ARMC10Q8N2F6 343 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZSCAN4Q8NAM6 433 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 INO80EQ8NBZ0 244 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR52N4Q8NGI2 321 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR13C3Q8NGS6 347 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR52N5Q8NH56 324 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 THAP6Q8TBB0 222 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ELP5Q8TE02 316 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 HERVK_113Q902F9 699 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PIK3IP1Q96FE7 263 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FOXQ1Q9C009 403 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR8D2Q9GZM6 311 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 S1PR5Q9H228 398 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PTGES2Q9H7Z7 377 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PNO1Q9NRX1 252 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 VSX1Q9NZR4 365 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MYO7BQ6PIF6 2116 aa4.84□□□□□ -1.64
LIMA1-212ENST00000552491 FER1L5A0AVI2 2057 aa4.84□□□□□ -1.64
LIMA1-212ENST00000552491 TRAV36DV7A0A075B6V5 113 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 A0A0B4J2A0 478 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 F8VVB4 439 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 F8VWA3 439 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 H0YIG0 161 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 EIF1AYO14602 144 aaKnown RBP4.83□□□□□ -1.64
LIMA1-212ENST00000552491 LINC01565O15544 149 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF208O43345 1280 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 NPIPB7O75200 414 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 OR6A2O95222 327 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 NSA2O95478 260 aaKnown RBP4.83□□□□□ -1.64
LIMA1-212ENST00000552491 CD79AP11912 226 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 VAMP1P23763 118 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 CXCR1P25024 350 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 NFYBP25208 207 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 SERPINF1P36955 418 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 EIF1AXP47813 144 aaKnown RBP4.83□□□□□ -1.64
LIMA1-212ENST00000552491 AKR1D1P51857 326 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 DCDP81605 110 aaKnown RBP4.83□□□□□ -1.64
LIMA1-212ENST00000552491 QRFPP83859 136 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 C10orf91Q5T1B1 145 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 PHF19Q5T6S3 580 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 RAB12Q6IQ22 244 aa4.83□□□□□ -1.64
LIMA1-212ENST00000552491 FAHD2BQ6P2I3 314 aaPredicted RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms