RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PPA1Q15181 289 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 TSC22D1Q15714 1073 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 OTPQ5XKR4 325 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF774Q6NX45 483 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 RPL22L1Q6P5R6 122 aaKnown RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 LRRN1Q6UXK5 716 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 KCTD8Q6ZWB6 473 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 OR1J2Q8NGS2 313 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 RORBQ92753 470 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 SPTSSAQ969W0 71 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 WFIKKN1Q96NZ8 548 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 MGLLQ99685 303 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 RNF121Q9H920 327 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 SP140LQ9H930 580 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 TRIM36Q9NQ86 728 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 NDRG3Q9UGV2 375 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 NUFIP1Q9UHK0 495 aaKnown RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF391Q9UJN7 358 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 SF3B6Q9Y3B4 125 aaKnown RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 R4GMQ9 66 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 CADP27708 2225 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF462Q96JM2 2506 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 IGHV1-18A0A0C4DH31 117 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 A0A0U1RQV5 110 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 NKX2-6A6NCS4 301 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 M0R135 149 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 SC5DO75845 299 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 LCKP06239 509 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CD79AP11912 226 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CCL1P22362 96 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 PTAFRP25105 342 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 HTR5AP47898 357 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 TPTEP56180 551 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 ALKBH1Q13686 389 aaKnown RBP8.3□□□□□ -1.08
LIMA1-211ENST00000552338 RAB39AQ14964 217 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF829Q3KNS6 432 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-211ENST00000552338 TP53I3Q53FA7 332 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CD200R1LQ6Q8B3 271 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 FAM220AQ7Z4H9 259 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CATSPERDQ86XM0 798 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-211ENST00000552338 ELMOD2Q8IZ81 293 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 YIPF7Q8N8F6 280 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 PLPP7Q8NBV4 271 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CCDC54Q8NEL0 328 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 OR52H1Q8NGJ2 320 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 OR2G2Q8NGZ5 317 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 AKR7LQ8NHP1 331 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 GATAD2BQ8WXI9 593 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 SPSB4Q96A44 273 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 SMIM19Q96E16 107 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF799Q96GE5 643 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 PGLYRP3Q96LB9 341 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 OPALINQ96PE5 141 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 DOK1Q99704 481 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CCDC90BQ9GZT6 254 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 RGCCQ9H4X1 137 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 SLC24A3Q9HC58 644 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 VCX3AQ9NNX9 186 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 NGBQ9NPG2 151 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 NPDC1Q9NQX5 325 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-211ENST00000552338 CENPMQ9NSP4 180 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 NPAP1Q9NZP6 1156 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 FRRS1LQ9P0K9 344 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 SCOCQ9UIL1 159 aa8.3□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM269A0A1B0GVZ9 245 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 LOC390937A0A1W2PQ73 354 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM212A6NML5 194 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 OR4C45A6NMZ5 311 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 FAM90A27PA6NNH2 459 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 E9PI62 339 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 H3BSA7 217 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 J3QKU1 62 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 J3QLW9 94 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 MAGEB4O15481 346 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 GPRIN2O60269 458 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 CECR9P0C854 216 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF19P17023 458 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 APEX1P27695 318 aaKnown RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 APLNRP35414 380 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 MAP2K4P45985 399 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 GP2P55259 537 aaKnown RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 NANOS3P60323 173 aaKnown RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 NAAAQ02083 359 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 HGFACQ04756 655 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 BLMHQ13867 455 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 MED22Q15528 200 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 TRAM1Q15629 374 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 TIGD6Q17RP2 521 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 TBC1D28Q2M2D7 210 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF544Q6NX49 715 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 UNQ9370/PRO34162Q6UXP9 181 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 MYPOPQ86VE0 399 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 PHC2Q8IXK0 858 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 DMRTC2Q8IXT2 367 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 MS4A15Q8N5U1 240 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 SLC30A7Q8NEW0 376 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 OR13F1Q8NGS4 319 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 SSC4DQ8WTU2 575 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms