RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TEX44Q53QW1 395 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 LGSNQ5TDP6 509 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 FAHD2BQ6P2I3 314 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 CYS1Q717R9 158 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 H2BFWTQ7Z2G1 175 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF550Q7Z398 422 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 NR2C2APQ86WQ0 139 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 RPS19BP1Q86WX3 136 aaKnown RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 PSTKQ8IV42 348 aaKnown RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 TMEM251Q8N6I4 163 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 ZFP62Q8NB50 900 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 BPIFCQ8NFQ6 507 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 OR5L2Q8NGL0 311 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 FAM172AQ8WUF8 416 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 ANKRD9Q96BM1 317 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 EFHD2Q96C19 240 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 FAHD2AQ96GK7 314 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 SLC38A2Q96QD8 506 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 F2RL3Q96RI0 385 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 NODALQ96S42 347 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 ANGPTL4Q9BY76 406 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 ASB8Q9H765 288 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 NHEJ1Q9H9Q4 299 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 TIGARQ9NQ88 270 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 MRPL22Q9NWU5 206 aaKnown RBP3.05□□□□□ -1.92
LIMA1-208ENST00000551691 B4GALT7Q9UBV7 327 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 PPIAL4AQ9Y536 164 aa3.05□□□□□ -1.92
LIMA1-208ENST00000551691 IGLV7-46A0A075B6I9 117 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 IGLV3-12A0A075B6K2 115 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TRBV5-4A0A0C4DH59 114 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 A0A0J9YY10 115 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 IQANK1A0A1B0GTG1 560 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 A0A1B0GUV1 79 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 A0A1W2PQ67 120 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ERICH4A6NGS2 130 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ARHGEF33A8MVX0 844 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 E7ESA3 106 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 FOXE1O00358 373 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 BCKDKO14874 412 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 CETN3O15182 167 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SRPX2O60687 465 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 AP2A1O95782 977 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 IGLV2-11P01706 119 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 FTH1P02794 183 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 H2AFZP0C0S5 128 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 PATE4P0C8F1 98 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 PABPC4LP0CB38 370 aaKnown RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 FDFT1P37268 417 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 HLCSP50747 726 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 NDUFV3P56181 108 aaKnown RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 STX17P56962 302 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 MLF1P58340 268 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 VLDLRP98155 873 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ENPEPQ07075 957 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 RAB40BQ12829 278 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 MERTKQ12866 999 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SLC10A1Q14973 349 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 NDUFA9Q16795 377 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ZCWPW2Q504Y3 356 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SFT2D3Q587I9 215 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 XKR7Q5GH72 579 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 FAM76BQ5HYJ3 339 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 DMRTC1Q5HYR2 192 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 C6orf226Q5I0X4 101 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 VAX1Q5SQQ9 334 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ADAMTSL4-AS1Q5T5F5 129 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SEL1L2Q5TEA6 688 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 FAM219BQ5XKK7 198 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 WDR25Q64LD2 544 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ATL3Q6DD88 541 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 USP43Q70EL4 1123 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 BZW1Q7L1Q6 419 aaKnown RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 LRRTM1Q86UE6 522 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ERI1Q8IV48 349 aaKnown RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 GPR137CQ8N3F9 429 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TRAM1L1Q8N609 369 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 COMMD1Q8N668 190 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 C15orf54Q8N8G6 183 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SNX31Q8N9S9 440 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 AQP11Q8NBQ7 271 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 OR2T33Q8NG76 320 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 OR5AR1Q8NGP9 310 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TCTEX1D2Q8WW35 142 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF75CPQ92670 426 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 STMN2Q93045 179 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 C11orf24Q96F05 449 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 MS4A14Q96JA4 679 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TECTBQ96PL2 329 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ST6GALNAC5Q9BVH7 336 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 PARD6BQ9BYG5 372 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TTTY12Q9BZ98 90 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ZDHHC11Q9H8X9 412 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 TMEM181Q9P2C4 612 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF629Q9UEG4 869 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 SLC2A6Q9UGQ3 507 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 ZNF221Q9UK13 617 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 AK6Q9Y3D8 172 aaKnown RBP3.04□□□□□ -1.92
LIMA1-208ENST00000551691 LYSTQ99698 3801 aa3.04□□□□□ -1.92
LIMA1-208ENST00000551691 NCKAP5O14513 1909 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms