RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ROBO4Q8WZ75 1007 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 WDFY2Q96P53 400 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 DEFB127Q9H1M4 99 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 KCNIP1Q9NZI2 227 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 MGAMO43451 1857 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 M0R135 149 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TNFSF11O14788 317 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 ZNF254O75437 659 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 GZMKP49863 264 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.66□□□□□ -0.06
CUX1-213ENST00000549414 COMTD1Q86VU5 262 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 CCDC71LQ8N9Z2 235 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 STK35Q8TDR2 534 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 TTC9Q92623 222 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 ZNF799Q96GE5 643 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 C1QTNF6Q9BXI9 259 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 RNF32Q9H0A6 362 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 MIXL1Q9H2W2 232 aa14.66□□□□□ -0.06
CUX1-213ENST00000549414 PATE3B3GLJ2 98 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 H7C2Y5 167 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 IMPA2O14732 288 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 GNB3P16520 340 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 CMTM1Q8IZ96 169 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 ABHD5Q8WTS1 349 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 MENTQ9BUN1 341 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 PILRAQ9UKJ1 303 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 TMEM221A6NGB7 291 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 F8W036 122 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 RPS18P62269 152 aaKnown RBP14.65□□□□□ -0.06
CUX1-213ENST00000549414 GRB2P62993 217 aaKnown RBP14.65□□□□□ -0.06
CUX1-213ENST00000549414 BLOC1S1P78537 153 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 LINC00303Q3SY05 128 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 PGAP1Q75T13 922 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 DEFB124Q8NES8 71 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 SECTM1Q8WVN6 248 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 DOCK4Q8N1I0 1966 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 LRRC37A2A6NM11 1700 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 ANKUB1A6NFN9 424 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 ALOX5APP20292 161 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 SLC37A1P57057 533 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 RIPPLY1Q0D2K3 151 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 GAB4Q2WGN9 574 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 DND1Q8IYX4 353 aaKnown RBP14.65□□□□□ -0.06
CUX1-213ENST00000549414 FAM109AQ8N4B1 249 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 OBP2BQ9NPH6 170 aa14.65□□□□□ -0.06
CUX1-213ENST00000549414 IRF2P14316 349 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 B4GALT1P15291 398 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 ZNF121P58317 390 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 TAS2R46P59540 309 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 OR4C16Q8NGL9 310 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PTPMT1Q8WUK0 201 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 C4orf45Q96LM5 186 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 OXGR1Q96P68 337 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 SLC25A21Q9BQT8 299 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 AIFM2Q9BRQ8 373 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 QPCTLQ9NXS2 382 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 DUSP13Q9UII6 198 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 FADS1O60427 444 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 WNT1P04628 370 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 EPHA8P29322 1005 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 CLVS2Q5SYC1 327 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 DOK3Q7L591 496 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 TSEN54Q7Z6J9 526 aaKnown RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 ANKRD37Q7Z713 158 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 KCNK15Q9H427 330 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PTTG3PQ9NZH4 202 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 DNAJB11Q9UBS4 358 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PLSCR5A0PG75 271 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PRKACBP22694 351 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 OPRM1P35372 400 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 RFX2P48378 723 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PHLDA2Q53GA4 152 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 ZC3H10Q96K80 434 aaKnown RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 VRK1Q99986 396 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 HRH4Q9H3N8 390 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 SIRT4Q9Y6E7 314 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.64□□□□□ -0.07
CUX1-213ENST00000549414 ZNF587BE7ETH6 402 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 IFNA5P01569 189 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 NPEPL1Q8NDH3 523 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 OR4S1Q8NGB4 309 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 ZPLD1Q8TCW7 415 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PSMF1Q92530 271 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 SLCO5A1Q9H2Y9 848 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 ZNF286AQ9HBT8 521 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 PRDM6Q9NQX0 595 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 MYOTQ9UBF9 498 aa14.64□□□□□ -0.07
CUX1-213ENST00000549414 RER1O15258 196 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 VAMP5O95183 116 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 OMGP23515 440 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 S100A11P31949 105 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 SLC25A1P53007 311 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 PRSS12P56730 875 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 TAF9Q16594 264 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 DEFB109BQ30KR1 87 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 VASH2Q86V25 355 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 TCEAL3Q969E4 200 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 MUCL1Q96DR8 90 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 ZC3HAV1LQ96H79 300 aaKnown RBP14.63□□□□□ -0.07
CUX1-213ENST00000549414 PRSS27Q9BQR3 290 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms