RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PNRC2Q9NPJ4 139 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 CHCHD3Q9NX63 227 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 CNOT2Q9NZN8 540 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 CGGBP1Q9UFW8 167 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 CELSR1Q9NYQ6 3014 aa15.14■□□□□ 0.01
CLSTN3-210ENST00000540931 LOC100509620A0A075B734 347 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 B9A039 149 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 MT-ND5P03915 603 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 KRT8P05787 483 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 PIPP12273 146 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 GCH1P30793 250 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 CALCRP30988 508 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 LIPAP38571 399 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 OPRL1P41146 370 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 FABP6P51161 128 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 RIDAP52758 137 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF91Q05481 1191 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 CDK5R2Q13319 367 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF829Q3KNS6 432 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 KRTAP27-1Q3LI81 207 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF718Q3SXZ3 478 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 C6orf52Q5T4I8 152 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF322Q6U7Q0 402 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 LYPD4Q6UWN0 246 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 BCDIN3DQ7Z5W3 292 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 KBTBD8Q8NFY9 601 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 SNX33Q8WV41 574 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 NINJ1Q92982 152 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 HS3ST6Q96QI5 342 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 C1QTNF5Q9BXJ0 243 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 RGCCQ9H4X1 137 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 SLCO1C1Q9NYB5 712 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 BLOC1S6Q9UL45 172 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 GRIP1Q9Y3R0 1128 aa15.13■□□□□ 0.01
CLSTN3-210ENST00000540931 DAPL1A0PJW8 107 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 F5H5K5 113 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 WBP4O75554 376 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 LCKP06239 509 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 MRPL3P09001 348 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 TTKP33981 857 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 SERPINF1P36955 418 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 COLCA1Q6ZS62 124 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 FAM220AQ7Z4H9 259 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 MUC15Q8N387 334 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF283Q8N7M2 679 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 OR10H4Q8NGA5 316 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 SMAP2Q8WU79 429 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 OR8B4Q96RC9 309 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 JAM3Q9BX67 310 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 MOB1AQ9H8S9 216 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 TPRKBQ9Y3C4 175 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 PMF1-BGLAPU3KQ54 211 aa15.12■□□□□ 0.01
CLSTN3-210ENST00000540931 XRCC2O43543 280 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 DENRO43583 198 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 SMPD2O60906 423 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 CLIC3O95833 236 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 CCDC159P0C7I6 412 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 ACSM4P0C7M7 580 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 SELEP16581 610 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 MYL12AP19105 171 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 SLC6A9P48067 706 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 PPP1CBP62140 327 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 HGFACQ04756 655 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 EFNB3Q15768 340 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 ZMAT1Q5H9K5 638 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 MBNL2Q5VZF2 373 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 B3GLCTQ6Y288 498 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 MYPOPQ86VE0 399 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 OR1J1Q8NGS3 322 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 ABHD4Q8TB40 342 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 APH1BQ8WW43 257 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 DOK1Q99704 481 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 CXorf56Q9H5V9 222 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 UBTD1Q9HAC8 227 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 FGF20Q9NP95 211 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 CYSLTR2Q9NS75 346 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 CBLN4Q9NTU7 201 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 IKZF2Q9UKS7 526 aa15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 EXOSC1Q9Y3B2 195 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-210ENST00000540931 ABCA4P78363 2273 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 MTORP42345 2549 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 E7EQL1 145 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 RAF1P04049 648 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 LCATP04180 440 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 ERCC1P07992 297 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 GNAO1P09471 354 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 CCL2P13500 99 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 ZNF250P15622 560 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 RPS27P42677 84 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 MMP16P51512 607 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 SNRPD2P62316 118 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 DTX2Q86UW9 622 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 SYS1Q8N2H4 156 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 OR10S1Q8NGN2 331 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 CNIH3Q8TBE1 160 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 SYNPRQ8TBG9 265 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 TMEM171Q8WVE6 324 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 MYDGFQ969H8 173 aa15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 MRPL24Q96A35 216 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-210ENST00000540931 LGALS12Q96DT0 336 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms