RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 RHBDD1Q8TEB9 315 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GPX8Q8TED1 209 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ZNF431Q8TF32 576 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 TMEM54Q969K7 222 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 FAM46BQ96A09 425 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 C10orf35Q96D05 121 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CPNE2Q96FN4 548 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 LIN37Q96GY3 246 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 SLC25A21Q9BQT8 299 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 MESP1Q9BRJ9 268 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 EMC6Q9BV81 110 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ZNF436Q9C0F3 470 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 NELFAQ9H3P2 528 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 TMEM185BQ9H7F4 350 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 PRDM6Q9NQX0 595 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GLTPQ9NZD2 209 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ABI3Q9P2A4 366 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 KLK11Q9UBX7 282 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 TCFL5Q9UL49 500 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 PRELID1Q9Y255 219 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 SLC5A6Q9Y289 635 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 HRH3Q9Y5N1 445 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 LHFPL6Q9Y693 200 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 DNAH14Q0VDD8 3507 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 A0A0U1RQV5 110 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 C21orf140B9A014 251 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 DISC1C4P0D8 188 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 H0YC42 278 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 TNFRSF10AO00220 468 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 LDLRAD4O15165 306 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 FABP7O15540 132 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 DOK2O60496 412 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GMDSO60547 372 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF780AO75290 641 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 RGS11O94810 467 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ALDOBP05062 364 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 SERPINA7P05543 415 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CHRM2P08172 466 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 JMJD7P0C870 316 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CCL3P10147 92 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CCL1P22362 96 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 DNASE1P24855 282 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 THBS4P35443 961 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CASRP41180 1078 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 EIF1AXP47813 144 aaKnown RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 CX3CR1P49238 355 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 SUCLG1P53597 346 aaKnown RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 CLDN6P56747 220 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CLDN17P56750 224 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GALK2Q01415 458 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 SPOCK1Q08629 439 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 PMPCAQ10713 525 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ECH1Q13011 328 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ARL6IP1Q15041 203 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 LINC00303Q3SY05 128 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ACTBL2Q562R1 376 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 TMEM164Q5U3C3 297 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 SFRP4Q6FHJ7 346 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 ASPHD2Q6ICH7 369 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 H3F3CQ6NXT2 135 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF529Q6P280 563 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CORO6Q6QEF8 472 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF813Q6ZN06 617 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CFAP77Q6ZQR2 320 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 RAB11FIP2Q7L804 512 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF627Q7L945 461 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 PPP1R32Q7Z5V6 425 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 COMMD2Q86X83 199 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF584Q8IVC4 421 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 BEST3Q8N1M1 668 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 C9orf62Q8N4C0 152 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ESX1Q8N693 406 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ZNF283Q8N7M2 679 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 PNLDC1Q8NA58 520 aaKnown RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 OR9K2Q8NGE7 335 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 OR4C16Q8NGL9 310 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GCDHQ92947 438 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 SPTSSAQ969W0 71 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 FGGYQ96C11 551 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 IP6K3Q96PC2 410 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GINS4Q9BRT9 223 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GPR87Q9BY21 358 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 OR10A4Q9H209 315 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CLEC4MQ9H2X3 399 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 AKIRIN1Q9H9L7 192 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 MYOZ1Q9NP98 299 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 NKIRAS2Q9NYR9 191 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 ASH2LQ9UBL3 628 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 GHRLQ9UBU3 117 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 BOKQ9UMX3 212 aaPredicted RBP5.88□□□□□ -1.47
USP28-206ENST00000538224 HSPB11Q9Y547 144 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 FLVCR1Q9Y5Y0 555 aa5.88□□□□□ -1.47
USP28-206ENST00000538224 CCDC187A0A096LP49 1063 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 DCDC2BA2VCK2 349 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 DHRS7CA6NNS2 312 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 ZNF736B4DX44 427 aaPredicted RBP5.87□□□□□ -1.47
USP28-206ENST00000538224 H3BSH0 61 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 M0R296 226 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 DHHO43323 396 aa5.87□□□□□ -1.47
USP28-206ENST00000538224 RAD1O60671 282 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms