RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 GJC3Q8NFK1 279 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 OR5L1Q8NGL2 311 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 OR13G1Q8NGZ3 307 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 OR52J3Q8NH60 311 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 APOBEC3DQ96AK3 386 aaPredicted RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 DACT3Q96B18 629 aaPredicted RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 DHRS1Q96LJ7 313 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 ZNF582Q96NG8 517 aaPredicted RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 ERMAPQ96PL5 475 aaPredicted RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 COQ7Q99807 217 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 SLC30A2Q9BRI3 323 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 TMEM246Q9BRR3 403 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 FUZQ9BT04 418 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 SSBP3Q9BWW4 388 aaPredicted RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 CCDC134Q9H6E4 229 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 ZNF446Q9NWS9 450 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 ABCD2Q9UBJ2 740 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 OR5V1Q9UGF6 321 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 ATPIF1Q9UII2 106 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 RPS6KA6Q9UK32 745 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 B9D1Q9UPM9 204 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 AURKCQ9UQB9 309 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 POLR1DQ9Y2S0 133 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 FAM32AQ9Y421 112 aaKnown RBP7.08□□□□□ -1.28
USP28-203ENST00000537490 TANC2Q9HCD6 1990 aa7.08□□□□□ -1.28
USP28-203ENST00000537490 TENM1Q9UKZ4 2725 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 IFNL4K9M1U5 179 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 KCNAB3O43448 404 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 CCDC22O60826 627 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 HLA-DPB1P04440 258 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 RPS2P15880 293 aaKnown RBP7.07□□□□□ -1.28
USP28-203ENST00000537490 CRABP1P29762 137 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 SRP9P49458 86 aaKnown RBP7.07□□□□□ -1.28
USP28-203ENST00000537490 NUDT2P50583 147 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 COX10Q12887 443 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 MAB21L1Q13394 359 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 SLC9A3R2Q15599 337 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 ZNF181Q2M3W8 571 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 RFX4Q33E94 735 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 KRTAP27-1Q3LI81 207 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 LEG1Q6P5S2 330 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 SMARCD3Q6STE5 483 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 SHISA2Q6UWI4 295 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 LYPD2Q6UXB3 125 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 LRRN1Q6UXK5 716 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 COLCA1Q6ZS62 124 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 MOGAT3Q86VF5 341 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 LINC00346Q8IVM7 164 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 PARP8Q8N3A8 854 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 RNF148Q8N7C7 305 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 BHLHE23Q8NDY6 225 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 OR52E2Q8NGJ4 325 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 OR4K13Q8NH42 304 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 RAB40AQ8WXH6 277 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 NMNAT3Q96T66 252 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 MS4A7Q9GZW8 240 aaPredicted RBP7.07□□□□□ -1.28
USP28-203ENST00000537490 HDHD2Q9H0R4 259 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 DCAF13Q9NV06 445 aaKnown RBP7.07□□□□□ -1.28
USP28-203ENST00000537490 TMEM100Q9NV29 134 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 MIOXQ9UGB7 285 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 LRCH1Q9Y2L9 728 aa7.07□□□□□ -1.28
USP28-203ENST00000537490 MGAM2Q2M2H8 2515 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 IGHV2-70DA0A0C4DH43 119 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 KIR2DS1A0A191URI9 304 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 MDFIC2A0A1B0GVS7 189 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 A0A1B0GWJ7 208 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 F5H5K5 113 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 NDUFAB1O14561 156 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 ARPC3O15145 178 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 PLATP00750 562 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 RNASE1P07998 156 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 ACSM4P0C7M7 580 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 HIST1H1CP16403 213 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 CPT2P23786 658 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 FPR3P25089 353 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 MDH1P40925 334 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 GNB2P62879 340 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 HOXA4Q00056 320 aaPredicted RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 GK2Q14410 553 aaPredicted RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 ZNF404Q494X3 552 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 PRR31Q5SQ13 230 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 SLC18B1Q6NT16 456 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 PGM2L1Q6PCE3 622 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 DNM1P34Q6PK57 102 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 BTNL3Q6UXE8 466 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 CFAP77Q6ZQR2 320 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 C9orf139Q6ZV77 190 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 C19orf18Q8NEA5 215 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 SLC26A10Q8NG04 563 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 SLCO4A1Q96BD0 722 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 UPRTQ96BW1 309 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 NEIL1Q96FI4 390 aaPredicted RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 PITX2Q99697 317 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 HCAR1Q9BXC0 346 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 MYLK2Q9H1R3 596 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 OR52D1Q9H346 318 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 FN3KQ9H479 309 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 ZNF696Q9H7X3 374 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 UNKLQ9H9P5 680 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 ZMAT3Q9HA38 289 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms