RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 BBS1Q8NFJ9 593 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 OR6K6Q8NGW6 343 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 UBASH3BQ8TF42 649 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 APOBEC3DQ96AK3 386 aaPredicted RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 TVP23BQ9NYZ1 205 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 ANK3Q12955 4377 aaKnown RBP11.05□□□□□ -0.64
VPS28-216ENST00000533806 A0A1B0GWJ7 208 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 ZSCAN5BA6NJL1 495 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 LYNX1G3V0Z9 82 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 PRKYO43930 277 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 RP2O75695 350 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 HEXAP06865 529 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 SPARCP09486 303 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 LYNX1P0DP58 116 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 RAC2P15153 192 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 COL8A2P25067 703 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 SNAPC1Q16533 368 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 PCGF3Q3KNV8 242 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 SLC35D3Q5M8T2 416 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 AADACL4Q5VUY2 407 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 TMEM154Q6P9G4 183 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 CLEC9AQ6UXN8 241 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 Q6ZR03 302 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 RHOUQ7L0Q8 258 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 DPY19L4Q7Z388 723 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 C10orf67Q8IYJ2 551 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 RNF133Q8WVZ7 376 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 CMBLQ96DG6 245 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 SLAMF6Q96DU3 332 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 INTS14Q96SY0 518 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 AMELYQ99218 206 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 TEAD3Q99594 435 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 GABARAPL3Q9BY60 117 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 OR51V1Q9H2C8 321 aa11.05□□□□□ -0.64
VPS28-216ENST00000533806 CGGBP1Q9UFW8 167 aaPredicted RBP11.05□□□□□ -0.64
VPS28-216ENST00000533806 PURGQ9UJV8 347 aaKnown RBP11.05□□□□□ -0.64
VPS28-216ENST00000533806 C5orf63A6NC05 138 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 CCDC182A6NF36 153 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 SAC3D1A6NKF1 404 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 F5H5K5 113 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 IGHV1-46P01743 117 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 ALPLP05186 524 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 IGFBP5P24593 272 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 LIPAP38571 399 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 ZNF81P51508 661 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 CCL8P80075 99 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 CDK5R2Q13319 367 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 HLXQ14774 488 aaPredicted RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 FAM209AQ5JX71 171 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 CXXC5Q7LFL8 322 aaKnown RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 ERI1Q8IV48 349 aaKnown RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 OTOSQ8NHW6 89 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 RDH5Q92781 318 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 YIPF5Q969M3 257 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 OTULINQ96BN8 352 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 ZMYND19Q96E35 227 aaPredicted RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 RAB3IPQ96QF0 476 aaPredicted RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 PIMREGQ9BSJ6 248 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 ABHD6Q9BV23 337 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 TEX12Q9BXU0 123 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 BPESC1Q9GZL8 116 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 S100A14Q9HCY8 104 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 CYSLTR2Q9NS75 346 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 USE1Q9NZ43 259 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 ZDHHC8Q9ULC8 765 aa11.04□□□□□ -0.64
VPS28-216ENST00000533806 FN1P02751 2386 aaKnown RBP11.04□□□□□ -0.64
VPS28-216ENST00000533806 M0R129 80 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 M0R135 149 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 MT-ND5P03915 603 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 CD55P08174 381 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 TACSTD2P09758 323 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 USF1P22415 310 aaPredicted RBP11.03□□□□□ -0.64
VPS28-216ENST00000533806 OPRL1P41146 370 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 CRYBB2P43320 205 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 TPTEP56180 551 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 GK2Q14410 553 aaPredicted RBP11.03□□□□□ -0.64
VPS28-216ENST00000533806 DRAM2Q6UX65 266 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 SHFQ7M4L6 423 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 PRSS45Q7RTY3 260 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 BCDIN3DQ7Z5W3 292 aaKnown RBP11.03□□□□□ -0.64
VPS28-216ENST00000533806 ZNF540Q8NDQ6 660 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 OR5L1Q8NGL2 311 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 OR6N2Q8NGY6 317 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 TMEM163Q8TC26 289 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 SNX33Q8WV41 574 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 SPTSSAQ969W0 71 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 ZNF799Q96GE5 643 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 PLEKHA8Q96JA3 519 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 KCNJ15Q99712 375 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 RBM4BQ9BQ04 359 aaKnown RBP11.03□□□□□ -0.64
VPS28-216ENST00000533806 CHODLQ9H9P2 273 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 MSL2Q9HCI7 577 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 PTTG3PQ9NZH4 202 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 ENOPH1Q9UHY7 261 aa11.03□□□□□ -0.64
VPS28-216ENST00000533806 IGHV4-61A0A0C4DH41 118 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 PLSCR5A0PG75 271 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 ZNF878C9JN71 531 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 TLX2O43763 284 aaPredicted RBP11.02□□□□□ -0.65
VPS28-216ENST00000533806 SELENOFO60613 162 aa11.02□□□□□ -0.65
VPS28-216ENST00000533806 LILRA1O75019 489 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms