RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 GABPB1Q06547 395 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-209ENST00000532725 APOFQ13790 326 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 ZSCAN26Q16670 478 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 SHFQ7M4L6 423 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 PQLC1Q8N2U9 271 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 TCEANCQ8N8B7 351 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 OR5L1Q8NGL2 311 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 OR6N2Q8NGY6 317 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 GTF3AQ92664 365 aaKnown RBP16.95■□□□□ 0.3
CPSF1-209ENST00000532725 SMR3AQ99954 134 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 ABHD6Q9BV23 337 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 GSX1Q9H4S2 264 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-209ENST00000532725 MYOZ1Q9NP98 299 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-209ENST00000532725 CENPMQ9NSP4 180 aa16.95■□□□□ 0.3
CPSF1-209ENST00000532725 A0A096LNT2 108 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 LOC390937A0A1W2PQ73 354 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 CCDC182A6NF36 153 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 M0R129 80 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 EI24O14681 340 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 SELENOFO60613 162 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 HPXP02790 462 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 RAC2P15153 192 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 KITLGP21583 273 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 LIPAP38571 399 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 ALDH3A2P51648 485 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 TPTEP56180 551 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 EIF2B1Q14232 305 aaKnown RBP16.94■□□□□ 0.3
CPSF1-209ENST00000532725 HLXQ14774 488 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-209ENST00000532725 AADACL4Q5VUY2 407 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 FBXW12Q6X9E4 464 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 RHOUQ7L0Q8 258 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 BCDIN3DQ7Z5W3 292 aaKnown RBP16.94■□□□□ 0.3
CPSF1-209ENST00000532725 ZNF786Q8N393 782 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 CBR4Q8N4T8 237 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 TMEM163Q8TC26 289 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 UBASH3BQ8TF42 649 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 SNX33Q8WV41 574 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 SPTSSAQ969W0 71 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 PRRG3Q9BZD7 231 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 RIBC2Q9H4K1 309 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 NKIRAS2Q9NYR9 191 aa16.94■□□□□ 0.3
CPSF1-209ENST00000532725 PURGQ9UJV8 347 aaKnown RBP16.94■□□□□ 0.3
CPSF1-209ENST00000532725 CHD3Q12873 2000 aaKnown RBP16.94■□□□□ 0.3
CPSF1-209ENST00000532725 VWC2LB2RUY7 222 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 E9PQ18 207 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 M0R135 149 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 NDUFS8O00217 210 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 COL8A2P25067 703 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 MAGEB1P43366 347 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 ZNF81P51508 661 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 RPS7P62081 194 aaKnown RBP16.93■□□□□ 0.3
CPSF1-209ENST00000532725 MEPCEQ7L2J0 689 aaKnown RBP16.93■□□□□ 0.3
CPSF1-209ENST00000532725 BIVMQ86UB2 503 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 OTOSQ8NHW6 89 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 RNF133Q8WVZ7 376 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 ZNF799Q96GE5 643 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 IL4I1Q96RQ9 567 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 AMELYQ99218 206 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 KCNJ15Q99712 375 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 SLC29A1Q99808 456 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 CYSLTR2Q9NS75 346 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 PTTG3PQ9NZH4 202 aa16.93■□□□□ 0.3
CPSF1-209ENST00000532725 ZNF878C9JN71 531 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 ANKRD65E5RJM6 399 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 LYNX1G3V0Z9 82 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 NCR1O76036 304 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 MT-ND5P03915 603 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 LCATP04180 440 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 LYNX1P0DP58 116 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 SLC25A16P16260 332 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 TAF13Q15543 124 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 PCGF3Q3KNV8 242 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 NXNL2Q5VZ03 156 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 DRAM2Q6UX65 266 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 SPATC1Q76KD6 591 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 ZNF454Q8N9F8 522 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 MAPK1IP1LQ8NDC0 245 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 COPS4Q9BT78 406 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 C9orf16Q9BUW7 83 aa16.92■□□□□ 0.3
CPSF1-209ENST00000532725 PLSCR5A0PG75 271 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 ZSCAN5BA6NJL1 495 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 TIMM8AO60220 97 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-209ENST00000532725 BAG2O95816 211 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 IGHV1-46P01743 117 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 ADH4P08319 380 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 ALOX5APP20292 161 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 ANOS1P23352 680 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 GIFP27352 417 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 OPRL1P41146 370 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 SLC15A1P46059 708 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 PRKXP51817 358 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 HCCSP53701 268 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 CCL8P80075 99 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 MRPS11P82912 194 aaKnown RBP16.91■□□□□ 0.3
CPSF1-209ENST00000532725 CDK5R2Q13319 367 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 ZBTB49Q6ZSB9 765 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 SLC16A9Q7RTY1 509 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 THEM6Q8WUY1 208 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 RDH5Q92781 318 aa16.91■□□□□ 0.3
CPSF1-209ENST00000532725 MSL2Q9HCI7 577 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms