RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 ECH1Q13011 328 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 PSG7Q13046 419 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 HLXQ14774 488 aaPredicted RBP11.42□□□□□ -0.58
VPS28-210ENST00000529182 CARTPTQ16568 116 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 AADACL4Q5VUY2 407 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 CLEC2AQ6UVW9 174 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 MAPK1IP1LQ8NDC0 245 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 SNX33Q8WV41 574 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 EME1Q96AY2 570 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 CMBLQ96DG6 245 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 ZNF799Q96GE5 643 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 TEAD3Q99594 435 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 COPS4Q9BT78 406 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 C9orf16Q9BUW7 83 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 ABHD6Q9BV23 337 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 C1QTNF5Q9BXJ0 243 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 MS4A5Q9H3V2 200 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 FBXO9Q9UK97 447 aaPredicted RBP11.42□□□□□ -0.58
VPS28-210ENST00000529182 KLHDC2Q9Y2U9 406 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 ORC6Q9Y5N6 252 aa11.42□□□□□ -0.58
VPS28-210ENST00000529182 ZNF878C9JN71 531 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 RNF223E7ERA6 249 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 LYNX1G3V0Z9 82 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 NCR1O76036 304 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 HPXP02790 462 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 LCATP04180 440 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 LYNX1P0DP58 116 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 SLC2A1P11166 492 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 SLC6A9P48067 706 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 RGS6P49758 472 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 MMP15P51511 669 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 RAD23AP54725 363 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 TPTEP56180 551 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 RCN1Q15293 331 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 TAF13Q15543 124 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 COLCA1Q6ZS62 124 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 ZBTB49Q6ZSB9 765 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 MEPCEQ7L2J0 689 aaKnown RBP11.41□□□□□ -0.58
VPS28-210ENST00000529182 SHFQ7M4L6 423 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 C1orf174Q8IYL3 243 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 OTOSQ8NHW6 89 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 FAM81AQ8TBF8 368 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 THEM6Q8WUY1 208 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 NEU4Q8WWR8 484 aaPredicted RBP11.41□□□□□ -0.58
VPS28-210ENST00000529182 UBE2FQ969M7 185 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 SPTSSAQ969W0 71 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 APOBEC3DQ96AK3 386 aaPredicted RBP11.41□□□□□ -0.58
VPS28-210ENST00000529182 MBOAT4Q96T53 435 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 SMR3AQ99954 134 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 TOR3AQ9H497 397 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 PURGQ9UJV8 347 aaKnown RBP11.41□□□□□ -0.58
VPS28-210ENST00000529182 N6AMT1Q9Y5N5 214 aa11.41□□□□□ -0.58
VPS28-210ENST00000529182 ZSCAN5BA6NJL1 495 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 C17orf100A8MU93 164 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 H3BSA7 217 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 TIMM8AO60220 97 aaPredicted RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 ERCC1P07992 297 aaPredicted RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 DAOP14920 347 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 ANPEPP15144 967 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 OTX1P32242 354 aaPredicted RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 ZNF81P51508 661 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 TSTQ16762 297 aaKnown RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 SNAI3Q3KNW1 292 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 LCN1P1Q5VSP4 162 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 NXNL2Q5VZ03 156 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 OR5AS1Q8N127 324 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 C10orf105Q8TEF2 133 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 RNF133Q8WVZ7 376 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 FAM168AQ92567 244 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 C18orf12Q96KH6 178 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 COX4I2Q96KJ9 171 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 COG8Q96MW5 612 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 KCNJ15Q99712 375 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 RHNO1Q9BSD3 238 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 REG4Q9BYZ8 158 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 GSX1Q9H4S2 264 aaPredicted RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 MSL2Q9HCI7 577 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 DNAJC27Q9NZQ0 273 aa11.4□□□□□ -0.58
VPS28-210ENST00000529182 H2AFY2Q9P0M6 372 aaPredicted RBP11.4□□□□□ -0.58
VPS28-210ENST00000529182 PLSCR5A0PG75 271 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 E9PQ18 207 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 J3QW42 95 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 SPRY3O43610 288 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 LYNP07948 512 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 INHBBP09529 407 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 TUBG1P23258 451 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 OPRL1P41146 370 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 CX3CR1P49238 355 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 PDLIM4P50479 330 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 DSCR9P59020 149 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 CDC42P60953 191 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 CCL8P80075 99 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 TRIP10Q15642 601 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 MOGQ16653 247 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 LRRC36Q1X8D7 754 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 LPCAT4Q643R3 524 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 OR2T2Q6IF00 324 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 LRRN1Q6UXK5 716 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 FBXW12Q6X9E4 464 aa11.39□□□□□ -0.59
VPS28-210ENST00000529182 SLC16A9Q7RTY1 509 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms