RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CX3CR1P49238 355 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 CLN3Q13286 438 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 TMEM178AQ8NBL3 297 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 OR8B12Q8NGG6 310 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 SYNPRQ8TBG9 265 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 RAB40AQ8WXH6 277 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 FBXO17Q96EF6 278 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 TMEM38BQ9NVV0 291 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 RABL2AQ9UBK7 228 aaPredicted RBP18.22■□□□□ 0.51
VPS28-209ENST00000528142 RABL2BQ9UNT1 228 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 CTDSPLO15194 276 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 SYT7O43581 403 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 SLC2A1P11166 492 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 MAP2K3P46734 347 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 RSPO1Q2MKA7 263 aaPredicted RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 RNFT1Q5M7Z0 435 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 IGFL2Q6UWQ7 119 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 GPR137CQ8N3F9 429 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 OR51A2Q8NGJ7 313 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 HAVCR1Q96D42 359 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 HDHD2Q9H0R4 259 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 PAQR5Q9NXK6 330 aaPredicted RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 ETAA1Q9NY74 926 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 WASF3Q9UPY6 502 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 MRPS7Q9Y2R9 242 aaKnown RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 CSAG2Q9Y5P2 127 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 LIPGQ9Y5X9 500 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 MEGF11A6BM72 1044 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 EEF1E1O43324 174 aaKnown RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 LYRM1O43325 122 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 ACTL6AO96019 429 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 FAM157BP0CG42 384 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 KIR2DL3P43628 341 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 ART1P52961 327 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 GLT8D1Q68CQ7 371 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 LYPD6Q86Y78 171 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 IZUMO1Q8IYV9 350 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 UBE2J2Q8N2K1 259 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 PLPP7Q8NBV4 271 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 OR51E1Q8TCB6 317 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 YIPF5Q969M3 257 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 SLC25A28Q96A46 364 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 FGGYQ96C11 551 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 ZC3HAV1LQ96H79 300 aaKnown RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 ZFP3Q96NJ6 502 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 ALKBH3Q96Q83 286 aaPredicted RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 RBFOX1Q9NWB1 397 aaKnown RBP18.21■□□□□ 0.51
VPS28-209ENST00000528142 SLC5A6Q9Y289 635 aa18.21■□□□□ 0.51
VPS28-209ENST00000528142 GSTZ1O43708 216 aaPredicted RBP18.2■□□□□ 0.5
VPS28-209ENST00000528142 OTX1P32242 354 aaPredicted RBP18.2■□□□□ 0.5
VPS28-209ENST00000528142 INPP1P49441 399 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 PLA2G7Q13093 441 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 RAB11BQ15907 218 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 ELFN2Q5R3F8 820 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 HACD4Q5VWC8 232 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 LUZP2Q86TE4 346 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 SERPINA12Q8IW75 414 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 ZNF283Q8N7M2 679 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 OR51D1Q8NGF3 324 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 OR1J2Q8NGS2 313 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 ADAT3Q96EY9 351 aaPredicted RBP18.2■□□□□ 0.5
VPS28-209ENST00000528142 S100A16Q96FQ6 103 aaKnown RBP18.2■□□□□ 0.5
VPS28-209ENST00000528142 GPR35Q9HC97 309 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 ZFHX4Q86UP3 3567 aa18.2■□□□□ 0.5
VPS28-209ENST00000528142 PHF3Q92576 2039 aaKnown RBP18.19■□□□□ 0.5
VPS28-209ENST00000528142 SYNGR4O95473 234 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 HNRNPCP07910 306 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS28-209ENST00000528142 CST2P09228 141 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 CCL1P22362 96 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 DGCR2P98153 550 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 GALK2Q01415 458 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 SLC36A2Q495M3 483 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 ZNF57Q68EA5 555 aaPredicted RBP18.19■□□□□ 0.5
VPS28-209ENST00000528142 MZT2BQ6NZ67 158 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 PLXDC2Q6UX71 529 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 MMP28Q9H239 520 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 ZDHHC11Q9H8X9 412 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 MCTS1Q9ULC4 181 aaKnown RBP18.19■□□□□ 0.5
VPS28-209ENST00000528142 NOSIPQ9Y314 301 aaKnown RBP18.19■□□□□ 0.5
VPS28-209ENST00000528142 A0A1B0GVI7 797 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 LOC390937A0A1W2PQ73 354 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 ACOT7O00154 380 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 DDOSTP39656 456 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 PTH2RP49190 550 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 SPOCK1Q08629 439 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 FOXC1Q12948 553 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 CEACAM16Q2WEN9 425 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 ZNF529Q6P280 563 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 FAM57BQ71RH2 274 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 FNDC9Q8TBE3 224 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 FAM3DQ96BQ1 224 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 SOX7Q9BT81 388 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 DEFB127Q9H1M4 99 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 N6AMT1Q9Y5N5 214 aa18.19■□□□□ 0.5
VPS28-209ENST00000528142 ZNF891A8MT65 544 aaPredicted RBP18.18■□□□□ 0.5
VPS28-209ENST00000528142 E9PLN8 166 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 CD3GP09693 182 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 MNDAP41218 407 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 C2orf76Q3KRA6 126 aa18.18■□□□□ 0.5
VPS28-209ENST00000528142 ZNF813Q6ZN06 617 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms