RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ARHGEF5Q12774 1597 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 USP42Q9H9J4 1324 aaKnown RBP2.85□□□□□ -1.95
CD44-217ENST00000525348 ZNF532Q9HCE3 1301 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 NRXN3Q9Y4C0 1643 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 PTPRFP10586 1907 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 THSD7AQ9UPZ6 1657 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 DCCP43146 1447 aa2.85□□□□□ -1.95
CD44-217ENST00000525348 CEP350Q5VT06 3117 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 A0A087X0K7 114 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 TRBV7-9A0A0J9YWB2 115 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 FBLL1A6NHQ2 334 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 E7EWF7 191 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 J3QRK9 145 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 WWP2O00308 870 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 SAP18O00422 153 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 CHST10O43529 356 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 FADS1O60427 444 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 DUSP11O75319 330 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 ENTPD5O75356 428 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CA11O75493 328 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PSMG1O95456 288 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 TXNDC12O95881 172 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 RLN2P04090 185 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 TCRBP04435 133 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CD5P06127 495 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 APRTP07741 180 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 C8orf89P0DMQ9 161 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 BGNP21810 368 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PAICSP22234 425 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 PAX6P26367 422 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 GCAP28676 217 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 AKT2P31751 481 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OTX1P32242 354 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 SOAT1P35610 550 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 HPCAL1P37235 193 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 COILP38432 576 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 RPL34P49207 117 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 RGS6P49758 472 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 HLCSP50747 726 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 IDH3GP51553 393 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 CRYBA4P53673 196 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 UGT2B15P54855 530 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 GNG11P61952 73 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CCL7P80098 99 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 MRPS22P82650 360 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 IFITM3Q01628 133 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OGDHQ02218 1023 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CRMP1Q14194 572 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 NDUFA9Q16795 377 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 SBK1Q52WX2 424 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 AGAP6Q5VW22 663 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 RSBN1Q5VWQ0 802 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 MED27Q6P2C8 311 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CENPUQ71F23 418 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 TMEM135Q86UB9 458 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 RANBP3LQ86VV4 465 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 ANGPTL5Q86XS5 388 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 ZNF100Q8IYN0 542 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 STX19Q8N4C7 294 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 EIF4E3Q8N5X7 224 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 OR2M7Q8NG81 312 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR9K2Q8NGE7 335 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR5B17Q8NGF7 314 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR6M1Q8NGM8 313 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR1K1Q8NGR3 316 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR13C9Q8NGT0 318 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR11L1Q8NGX0 322 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 OR10T2Q8NGX3 314 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 ZFAND1Q8TCF1 268 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 SLC38A4Q969I6 547 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 MRPL24Q96A35 216 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 PNPLA2Q96AD5 504 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 MCUR1Q96AQ8 359 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 ASB9Q96DX5 294 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PCED1BQ96HM7 432 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PPP1R16AQ96I34 528 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CYYR1Q96J86 154 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CNBD2Q96M20 576 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 WFIKKN1Q96NZ8 548 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 RAB40CQ96S21 281 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PARK7Q99497 189 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 KLF6Q99612 283 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 OMDQ99983 421 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 UTP23Q9BRU9 249 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 NICN1Q9BSH3 213 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 UGT2B28Q9BY64 529 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 REG4Q9BYZ8 158 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 PKIBQ9C010 78 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CXXC4Q9H2H0 198 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 SRD5A3Q9H8P0 318 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 WDR54Q9H977 334 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 C6orf50Q9HD87 102 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 DYRK4Q9NR20 520 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 CCDC59Q9P031 241 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 STOX2Q9P2F5 926 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 ZNF282Q9UDV7 671 aaPredicted RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 MRM2Q9UI43 246 aaKnown RBP2.84□□□□□ -1.95
CD44-217ENST00000525348 PSORS1C1Q9UIG5 152 aa2.84□□□□□ -1.95
CD44-217ENST00000525348 LEF1Q9UJU2 399 aaPredicted RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms