RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SRFP11831 508 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 KIR2DL1P43626 348 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TDHQ8IZJ6 230 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CLEC1AQ8NC01 280 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 FAM86C1Q9NVL1 165 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 K7EPK0 472 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 LPLP06858 475 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 PEBP1P30086 187 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 APLNRP35414 380 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 DOC2BQ14184 412 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TAF9Q16594 264 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TMUB2Q71RG4 321 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 FAM71E2Q8N5Q1 922 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TRAF4Q9BUZ4 470 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 SH3BGRL2Q9UJC5 107 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 FBXO4Q9UKT5 387 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 WASF3Q9UPY6 502 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TTC28Q96AY4 2481 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 D6RAR5 112 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 NPIPB8E9PQR5 432 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 ACSM1Q08AH1 577 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 IKZF1Q13422 519 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CLINT1Q14677 625 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 OR52W1Q6IF63 320 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 C5orf46Q6UWT4 87 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 MDGA2Q7Z553 956 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CPEB2Q7Z5Q1 589 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CMBLQ96DG6 245 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 WDR89Q96FK6 387 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF681Q96N22 645 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 SLC19A3Q9BZV2 496 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 VN1R1Q9GZP7 353 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CRISPLD2Q9H0B8 497 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CBY1Q9Y3M2 126 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CACNA1HO95180 2353 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 LGALS8O00214 317 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 LAP3P28838 519 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 APOBEC1P41238 236 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CNN3Q15417 329 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF79Q15937 498 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 WDR38Q5JTN6 314 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 AKR1C8PQ5T2L2 129 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 CD300LDQ6UXZ3 194 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 LILRB2Q8N423 598 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF321PQ8N8H1 164 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 GJC3Q8NFK1 279 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 OR52N5Q8NH56 324 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 C1QTNF6Q9BXI9 259 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 TINAGL1Q9GZM7 467 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 NXT1Q9UKK6 140 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 DTX4Q9Y2E6 619 aa10.57□□□□□ -0.72
SYNPO-204ENST00000519664 NOSIPQ9Y314 301 aaKnown RBP10.57□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF98A6NK75 572 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 ACSM4P0C7M7 580 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 GLB1P16278 677 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 SNRPNP63162 240 aaKnown RBP10.56□□□□□ -0.72
SYNPO-204ENST00000519664 DCAF12Q5T6F0 453 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 NLRC3Q7RTR2 1065 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 VASH2Q86V25 355 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 CCDC71LQ8N9Z2 235 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 KCNJ16Q9NPI9 418 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 V9GYH0 126 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 ANKRD30BLA7E2S9 258 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 FTCDNL1E5RQL4 147 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 IMPA2O14732 288 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 PLA2G10O15496 165 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 PMS2P2O95744 297 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 TK1P04183 234 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 FABP1P07148 127 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 ABOP16442 354 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 NAGAP17050 411 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 CPT2P23786 658 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 SELENOVP59797 346 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 TMEM217Q8N7C4 229 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 MARCH1Q8TCQ1 289 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 C12orf49Q9H741 205 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 LHX9Q9NQ69 397 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 FSCN3Q9NQT6 498 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 KCNIP1Q9NZI2 227 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 WIF1Q9Y5W5 379 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 A0A0D9SG52 128 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 LOC102725191A0A1B0GVB3 256 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 EFSO43281 561 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF250P15622 560 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 HRH1P35367 487 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 PNLIPRP2P54317 469 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 DND1Q8IYX4 353 aaKnown RBP10.56□□□□□ -0.72
SYNPO-204ENST00000519664 SLC43A2Q8N370 569 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 OR1L3Q8NH93 324 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 LIPHQ8WWY8 451 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 GNRHR2Q96P88 292 aa10.56□□□□□ -0.72
SYNPO-204ENST00000519664 SIRT4Q9Y6E7 314 aaPredicted RBP10.56□□□□□ -0.72
SYNPO-204ENST00000519664 A0A096LPE4 126 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 A0A1W2PPZ6 126 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 LINC00862A6NCI5 91 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 TRAPPC2LH3BP13 241 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 CD53P19397 219 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 EPHA4P54764 986 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 ST3GAL2Q16842 350 aa10.55□□□□□ -0.72
SYNPO-204ENST00000519664 OR2AK2Q8NG84 335 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms