RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TSHBP01222 138 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTHP01270 115 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GCGP01275 180 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFNA14P01570 189 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD8AP01732 235 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV3-9P01782 118 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHG1P01857 330 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CATP04040 527 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RLN2P04090 185 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEMG1P04279 462 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFNA16P05015 189 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARG1P05089 322 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HMGN1P05114 100 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ISG15P05161 165 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALB1P05937 261 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HPNP05981 417 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FABP1P07148 127 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD55P08174 381 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MELTFP08582 738 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HCKP08631 526 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS17P08708 135 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPL3P09001 348 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNRPAP09012 282 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXD4P09016 255 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXC4P09017 264 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMP7P09237 267 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WNT2P09544 360 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4E1P0C645 316 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACSM4P0C7M7 580 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR8U9P0C7N5 309 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35G6P0C7Q6 338 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZDHHC11BP0C7U3 371 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF883P0CG24 379 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIMS3P0CW19 117 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIMS4P0CW20 117 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC166P0CW27 439 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RD3LP0DJH9 198 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HIST1H1EP10412 219 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIPCP11150 499 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC2A1P11166 492 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PVRP15151 417 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAX1P15863 534 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CBR1P16152 277 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD36P16671 472 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF12P17014 697 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CAPN2P17655 700 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HLA-GP17693 338 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGFBP3P17936 291 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYL12AP19105 171 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK2A2P19784 350 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 AZU1P20160 251 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PVALBP20472 110 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 M6PRP20645 277 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCL3P20749 454 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 USF1P22415 310 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRKACGP22612 351 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WARSP23381 471 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 F8A1P23610 371 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYL9P24844 172 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 F2RP25116 425 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMB9P28065 219 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HTR1DP28221 377 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR1E1P30953 314 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNRHRP30968 328 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 EPHX2P34913 555 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPRP35270 261 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SSTR5P35346 364 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPX4P36969 197 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TGFBR2P37173 567 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 COILP38432 576 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCTP40126 519 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLP1RP43220 463 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEA12P43365 314 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS2P43631 304 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS4P43632 304 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR6P46095 362 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPS9P46781 194 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR1D4P47884 311 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPL29P47914 159 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALDH3B2P48448 385 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GSSP48637 474 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK1A1P48729 337 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYB561P49447 251 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNG10P50151 68 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERPINB8P50452 374 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDLIM4P50479 330 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FABP6P51161 128 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RORCP51449 518 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MNAT1P51948 309 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIDAP52758 137 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STC1P52823 247 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRIP2P52943 208 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 HCCSP53701 268 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRISP1P54107 249 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MFAP2P55001 183 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAX9P55771 341 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DLX1P56177 255 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DLX6P56179 175 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RWDD2BP57060 319 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB38P57729 211 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms