RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ADAM10O14672 748 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 GALR2O43603 387 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 CD55P08174 381 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 GLRA1P23415 457 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TNFSF10P50591 281 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TAS2R43P59537 309 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 UBE2KP61086 200 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 BDH1Q02338 343 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 ELOCQ15369 112 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 DECR1Q16698 335 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 MRPL2Q5T653 305 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 BTNL8Q6UX41 500 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TMEM182Q6ZP80 229 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 S100A7AQ86SG5 101 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 LYG2Q86SG7 212 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TRAPPC6BQ86SZ2 158 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 ZNF227Q86WZ6 799 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 OR6N2Q8NGY6 317 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TMEM37Q8WXS4 190 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 SUSD3Q96L08 255 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 SGIP1Q9BQI5 828 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 CHST11Q9NPF2 352 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 KCNE5Q9UJ90 142 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 TP53TG5Q9Y2B4 290 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 HDGFL3Q9Y3E1 203 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 MRPS18BQ9Y676 258 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 BRWD1Q9NSI6 2320 aa6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 MTCL1Q9Y4B5 1905 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-207ENST00000508466 KNTC1P50748 2209 aa6.52□□□□□ -1.36
LIMCH1-207ENST00000508466 TEX13DA0A0J9YY54 714 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 K7EPK0 472 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 IGLV3-27P01718 113 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 IFNA6P05013 189 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 RAB40ALP0C0E4 278 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF735P0CB33 412 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC25A4P12235 298 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 CEACAM8P31997 349 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM33P57088 247 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 COTL1Q14019 142 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ISXQ2M1V0 245 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SP6Q3SY56 376 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 PRAMEF14Q5SWL7 426 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 FAM46CQ5VWP2 391 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 PTCRAQ6ISU1 281 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ANKRD16Q6P6B7 361 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 IL34Q6ZMJ4 242 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 CPEB2Q7Z5Q1 589 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF584Q8IVC4 421 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 FAM185AQ8N0U4 392 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 FAM71E2Q8N5Q1 922 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ST6GALNAC3Q8NDV1 305 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 Q8NFD4 153 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 RAB40AQ8WXH6 277 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC22A18Q96BI1 424 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC41A2Q96JW4 573 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 LPAR4Q99677 370 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 POTEKPQ9BYX7 375 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 CNTNAP3Q9BZ76 1288 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF700Q9H0M5 742 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 MSL2Q9HCI7 577 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM74BQ9NUR3 256 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 CKLFQ9UBR5 152 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 FBXL17Q9UF56 701 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 PHF3Q92576 2039 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 KIAA1671Q9BY89 1806 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TCF20Q9UGU0 1960 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 DCHS1Q96JQ0 3298 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 COL16A1Q07092 1604 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 OR4C45A6NMZ5 311 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 DHRS7CA6NNS2 312 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 EFSO43281 561 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 KLF4O43474 513 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TGOLN2O43493 480 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 PAX6P26367 422 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 KHKP50053 298 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 NOVA1P51513 510 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 DLK1P80370 383 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 LMAN2Q12907 356 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF345Q14585 488 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 EXOSC7Q15024 291 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TOMM34Q15785 309 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ANKRD55Q3KP44 614 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TEX30Q5JUR7 227 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SLC39A5Q6ZMH5 540 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TMEM123Q8N131 208 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZFP62Q8NB50 900 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ADAMTS17Q8TE56 1095 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 SMARCD2Q92925 531 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF775Q96BV0 537 aaPredicted RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 RBM18Q96H35 190 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 UTP23Q9BRU9 249 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 AICDAQ9GZX7 198 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 MRM2Q9UI43 246 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 TRPV2Q9Y5S1 764 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 KPTNQ9Y664 436 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ZNF831Q5JPB2 1677 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 ATG2BQ96BY7 2078 aa6.52□□□□□ -1.37
LIMCH1-207ENST00000508466 H3BQ15 152 aa6.51□□□□□ -1.37
LIMCH1-207ENST00000508466 SIAH2O43255 324 aa6.51□□□□□ -1.37
LIMCH1-207ENST00000508466 SLCO2B1O94956 709 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms