RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ATP23Q9Y6H3 246 aa8.67□□□□□ -1.02
NUP54-203ENST00000504173 CADP27708 2225 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 HEATR1Q9H583 2144 aaKnown RBP8.66□□□□□ -1.02
NUP54-203ENST00000504173 LOC100509620A0A075B734 347 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 SHISA9B4DS77 424 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 ZNF670-ZNF695F2Z2N8 137 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 F5H5K5 113 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 PHYHO14832 338 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 CRLF1O75462 422 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 DBHP09172 617 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 ZNF35P13682 527 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 ALOX5APP20292 161 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 MYF6P23409 242 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 GRB2P62993 217 aaKnown RBP8.66□□□□□ -1.02
NUP54-203ENST00000504173 DEFB113Q30KQ7 82 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 KRT80Q6KB66 452 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 ARL9Q6T311 187 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 KRT77Q7Z794 578 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 PAQR4Q8N4S7 273 aaPredicted RBP8.66□□□□□ -1.02
NUP54-203ENST00000504173 OR10H4Q8NGA5 316 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 FBLIM1Q8WUP2 373 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 RNF133Q8WVZ7 376 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 ASB17Q8WXJ9 295 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 SPTSSAQ969W0 71 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 CNBD2Q96M20 576 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 AMELYQ99218 206 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 TTTY10Q9BZA0 68 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 OR51B6Q9H340 312 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 DDX28Q9NUL7 540 aaKnown RBP8.66□□□□□ -1.02
NUP54-203ENST00000504173 COPS3Q9UNS2 423 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 SPEF1Q9Y4P9 236 aa8.66□□□□□ -1.02
NUP54-203ENST00000504173 A0A1W2PPR1 153 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 IRGMA1A4Y4 181 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 M0R135 149 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 FAM20BO75063 409 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 FADS2O95864 444 aaKnown RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 ABHD16AO95870 558 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 H2BFMP0C1H6 154 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 OR2T7P0C7T2 308 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 FAM157BP0CG42 384 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 NR4A1P22736 598 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 HSD11B1P28845 292 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 SLC15A1P46059 708 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 SLC6A9P48067 706 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 CXCR4P61073 352 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ACTC1P68032 377 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ACTA1P68133 377 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 HGFACQ04756 655 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 RAB40BQ12829 278 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 SNTB2Q13425 540 aaKnown RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 ZNF672Q499Z4 452 aaPredicted RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 KLHL22Q53GT1 634 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 KCTD18Q6PI47 426 aaPredicted RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 VHLLQ6RSH7 139 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ZNF322Q6U7Q0 402 aaPredicted RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 PAMR1Q6UXH9 720 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 LRRN1Q6UXK5 716 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 UNQ6126/PRO20091Q6UXV3 157 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 NUP37Q8NFH4 326 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 OR2T27Q8NH04 317 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 IPCEF1Q8WWN9 437 aaPredicted RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 AKAP1Q92667 903 aaKnown RBP eCLIP8.65□□□□□ -1.02
NUP54-203ENST00000504173 NEUROG1Q92886 237 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 LGALS12Q96DT0 336 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ZNF799Q96GE5 643 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 C4orf45Q96LM5 186 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 DCLRE1CQ96SD1 692 aaKnown RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 KCNJ15Q99712 375 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 UBTD1Q9HAC8 227 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ELOVL3Q9HB03 270 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 IKZF2Q9UKS7 526 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 EXOGQ9Y2C4 368 aaKnown RBP8.65□□□□□ -1.02
NUP54-203ENST00000504173 GRIP1Q9Y3R0 1128 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 PCDHGB1Q9Y5G3 927 aa8.65□□□□□ -1.02
NUP54-203ENST00000504173 ANK3Q12955 4377 aaKnown RBP8.64□□□□□ -1.03
NUP54-203ENST00000504173 A0A1W2PQL4 384 aaPredicted RBP8.64□□□□□ -1.03
NUP54-203ENST00000504173 DAPL1A0PJW8 107 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 E7EQL1 145 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 PSMD9O00233 223 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 HS3ST1O14792 307 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 SMPD2O60906 423 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 APOC1P02654 83 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 LCKP06239 509 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 ACSM4P0C7M7 580 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 OPRL1P41146 370 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 WNT5AP41221 380 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 RAD52P43351 418 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 CX3CR1P49238 355 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 PRKXP51817 358 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 UCP2P55851 309 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 TPTEP56180 551 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 RPS23P62266 143 aaKnown RBP8.64□□□□□ -1.03
NUP54-203ENST00000504173 KRTAP27-1Q3LI81 207 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 C6orf141Q5SZD1 244 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 SHEQ5VZ18 495 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 LAIR2Q6ISS4 152 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 RFPL4BQ6ZWI9 263 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 RHOUQ7L0Q8 258 aa8.64□□□□□ -1.03
NUP54-203ENST00000504173 RFLNBQ8N5W9 214 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms