RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 IGHV1OR21-1A0A087WYE8 117 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TMEM82A0PJX8 343 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR6C76A6NM76 312 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR2T1O43869 369 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CD74P04233 296 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZP3P21754 424 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ACHEP22303 614 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SQSTM1Q13501 440 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FAM209BQ5JX69 171 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF660Q6AZW8 331 aaPredicted RBP14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TFAP2EQ6VUC0 442 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CFAP77Q6ZQR2 320 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DCXRQ7Z4W1 244 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LINC00346Q8IVM7 164 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 D2HGDHQ8N465 521 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ASB10Q8WXI3 467 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 EDEM2Q9BV94 578 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZMAT3Q9HA38 289 aaKnown RBP14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MYOZ1Q9NP98 299 aaPredicted RBP14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 KLK13Q9UKR3 277 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FBXO4Q9UKT5 387 aa14.36□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MEGF11A6BM72 1044 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GALR2O43603 387 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RPA2P15927 270 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DNASE1L1P49184 302 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZP4Q12836 540 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TCF15Q12870 199 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GK2Q14410 553 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ATPAF1Q5TC12 328 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LRFN4Q6PJG9 635 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C12orf45Q8N5I9 185 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PRSS33Q8NF86 280 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR4D6Q8NGJ1 314 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ARL5BQ96KC2 179 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC25A21Q9BQT8 299 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 POTEKPQ9BYX7 375 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SHARPINQ9H0F6 387 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ARRDC1-AS1Q9H2J1 176 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MED11Q9P086 117 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 UPB1Q9UBR1 384 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CNOT1A5YKK6 2376 aaKnown RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GVINP1Q7Z2Y8 2422 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C2orf72A6NCS6 295 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RFPL4AA6NLU0 287 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RFPL4AL1F8VTS6 287 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LINC01387J3KSC0 135 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DLL1O00548 723 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF354AO60765 605 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 AMY2AP04746 511 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MPGP29372 298 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HOXA6P31267 233 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ARL4DP49703 201 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 JAGN1Q8N5M9 183 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR13C8Q8NGS7 320 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CCDC107Q8WV48 283 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ASB13Q8WXK3 278 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 KCNK17Q96T54 332 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF230Q9UIE0 474 aaPredicted RBP14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 UNC13CQ8NB66 2214 aa14.35□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 IGHV3-20A0A0C4DH32 117 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 A8MXK9 166 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 F8W036 122 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 AQP8O94778 261 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF823P16415 610 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GMFBP60983 142 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TUSC1Q2TAM9 212 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C11orf88Q6PI97 169 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C5orf46Q6UWT4 87 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SHISA6Q6ZSJ9 500 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TMED4Q7Z7H5 227 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR6K3Q8NGY3 331 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR6S1Q8NH40 331 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PTX4Q96A99 478 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC6A7Q99884 636 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DPYSL5Q9BPU6 564 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MFFQ9GZY8 342 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLCO5A1Q9H2Y9 848 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LDAHQ9H6V9 325 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CTSFQ9UBX1 484 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LAMA5O15230 3695 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FAM186AA6NE01 2351 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PHF3Q92576 2039 aaKnown RBP14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYH2 397 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 A6NIZ1 184 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 A6NJ64 397 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 P2RY10O00398 339 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 APOC1P02654 83 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF28P17035 718 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 RAP1BP61224 184 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HNRNPKP61978 463 aaKnown RBP eCLIP14.34□□□□□ -0.111e-6■■□□□ 12.4
MSH5-SAPCD1-208ENST00000498473 RAP1AP62834 184 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TSC22D1Q15714 1073 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PLPP5Q8NEB5 264 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR1J2Q8NGS2 313 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DNASE2BQ8WZ79 361 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C12orf57Q99622 126 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MESP1Q9BRJ9 268 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ZNF107Q9UII5 783 aaPredicted RBP14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GDF2Q9UK05 429 aaPredicted RBP14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PILRBQ9UKJ0 227 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms