RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PHYHO14832 338 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 ENSAO43768 121 aaKnown RBP9.72□□□□□ -0.85
COL6A3-213ENST00000493475 LIPFP07098 398 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 WNT2P09544 360 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 RHCEP18577 417 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 FPR3P25089 353 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 PITPNBP48739 271 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 PAX8Q06710 450 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 HSP90B2PQ58FF3 399 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 OR2T2Q6IF00 324 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 SMARCD3Q6STE5 483 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 DCDC5Q6ZRR9 648 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 FAM122BQ7Z309 247 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 OR10AD1Q8NGE0 317 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 OR4C15Q8NGM1 316 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 SPTSSAQ969W0 71 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 MCUR1Q96AQ8 359 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 UPRTQ96BW1 309 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 RSRC1Q96IZ7 334 aaKnown RBP9.72□□□□□ -0.85
COL6A3-213ENST00000493475 GPX7Q96SL4 187 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-213ENST00000493475 SLC30A2Q9BRI3 323 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 SLITRK2Q9H156 845 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 BEX1Q9HBH7 125 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 NRIP3Q9NQ35 241 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 FGFR1OP2Q9NVK5 253 aa9.72□□□□□ -0.85
COL6A3-213ENST00000493475 MEGF8Q7Z7M0 2845 aa9.71□□□□□ -0.85
COL6A3-213ENST00000493475 TRAV40A0A0B4J280 105 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 UNC119BA6NIH7 251 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 IQCF6A8MYZ5 107 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 CDC42EP2O14613 210 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 IMPA2O14732 288 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 HLA-DQA2P01906 255 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SLC6A6P31641 620 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SLC7A2P52569 658 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 KCNMB1Q16558 191 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF404Q494X3 552 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 TMEM255AQ5JRV8 349 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 LEG1Q6P5S2 330 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 C16orf87Q6PH81 154 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 Q6ZR03 302 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 PGAP1Q75T13 922 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SPATC1Q76KD6 591 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 MRPL21Q7Z2W9 205 aaKnown RBP9.71□□□□□ -0.86
COL6A3-213ENST00000493475 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-213ENST00000493475 MOGAT3Q86VF5 341 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 BHLHE23Q8NDY6 225 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 OR4F5Q8NH21 305 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 FANK1Q8TC84 345 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SLC7A13Q8TCU3 470 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 CMTM5Q96DZ9 223 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 DUX5Q96PT3 197 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SIGLEC11Q96RL6 698 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 PITX2Q99697 317 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 NUDT16L1Q9BRJ7 211 aaKnown RBP9.71□□□□□ -0.86
COL6A3-213ENST00000493475 NUAK2Q9H093 628 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 FN3KRPQ9HA64 309 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 NOX4Q9NPH5 578 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 ERVK-18Q9QC07 812 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 KCNG2Q9UJ96 466 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 SIGLEC7Q9Y286 467 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 IER3IP1Q9Y5U9 82 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 DYSFO75923 2080 aa9.71□□□□□ -0.86
COL6A3-213ENST00000493475 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 KIR2DS1A0A191URI9 304 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 FFAR1O14842 300 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 RER1O15258 196 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 NDUFA2O43678 99 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TXNDC12O95881 172 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 CYB5R3P00387 301 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 KNG1P01042 644 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 ZNF823P16415 610 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 NUDT2P50583 147 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TPTEP56180 551 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SEC61A1P61619 476 aaKnown RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 COX10Q12887 443 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 HLXQ14774 488 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 PDCD1Q15116 288 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SLC9A3R2Q15599 337 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 CCDC92Q53HC0 331 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 KLF17Q5JT82 389 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TBPL2Q6SJ96 375 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SLC15A3Q8IY34 581 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 PNLDC1Q8NA58 520 aaKnown RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SPERTQ8NA61 448 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SLC7A6Q92536 515 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 FAM71F1Q96KD3 344 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TECTBQ96PL2 329 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 ERMAPQ96PL5 475 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 ATF6BQ99941 703 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 NSRP1Q9H0G5 558 aaKnown RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 MMADHCQ9H3L0 296 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-213ENST00000493475 OPA3Q9H6K4 179 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TMEM165Q9HC07 324 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SPAG4Q9NPE6 437 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 CMTM6Q9NX76 183 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 DCAF16Q9NXF7 216 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TMCC3Q9ULS5 477 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 SNX13Q9Y5W8 968 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 TANC2Q9HCD6 1990 aa9.7□□□□□ -0.86
COL6A3-213ENST00000493475 F5H5K5 113 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms