RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ENPP1P22413 925 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 AVPR2P30518 371 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 FAPQ12884 760 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 ZNF813Q6ZN06 617 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 TRAF4Q9BUZ4 470 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 ZNF416Q9BWM5 594 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 A0A1B0GVI7 797 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 SMLR1H3BR10 107 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 BDKRB2P30411 391 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 ZNF121P58317 390 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 LSM6P62312 80 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 GUCA2AQ02747 115 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 SGCAQ16586 387 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 FOXL2NBQ6ZUU3 175 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 CDH24Q86UP0 819 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 ZIC4Q8N9L1 334 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR4D6Q8NGJ1 314 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR14L1PQ8NHC6 308 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR51E1Q8TCB6 317 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 FOXRED1Q96CU9 486 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 RFPL3SP0C7P2 107 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 GNALP38405 381 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 BEST4Q8NFU0 473 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR1M1Q8NGA1 313 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR8B12Q8NGG6 310 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 KCNE4Q8WWG9 221 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 SORCS2Q96PQ0 1159 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 OR10A4Q9H209 315 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 BEX1Q9HBH7 125 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 DEPPQ9NTK1 212 aa18.65■□□□□ 0.58
CCDC88B-208ENST00000492980 SMAD9O15198 467 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 DNPH1O43598 174 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 SLC2A1P11166 492 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 MSR1P21757 451 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ANOS1P23352 680 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 CX3CR1P49238 355 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 CYB561P49447 251 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 BCL2A1Q16548 175 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 PCGF3Q3KNV8 242 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 LINC00303Q3SY05 128 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 GGNQ86UU5 652 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 DEDD2Q8WXF8 326 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 MS4A3Q96HJ5 214 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 NELFAQ9H3P2 528 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF319Q9P2F9 582 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 CCDC187A0A096LP49 1063 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 PRSS3P35030 304 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 SELENOPP49908 381 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 SUCLG1P53597 346 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 RAC3P60763 192 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF529Q6P280 563 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 FGD2Q7Z6J4 655 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 OR52N4Q8NGI2 321 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ZFAND1Q8TCF1 268 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 SLC39A7Q92504 469 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 NABP1Q96AH0 204 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 TMEM246Q9BRR3 403 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 TMEM138Q9NPI0 162 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 FOXD3Q9UJU5 478 aaPredicted RBP18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ITGB1BP2Q9UKP3 347 aa18.64■□□□□ 0.57
CCDC88B-208ENST00000492980 ARPC1BO15143 372 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 MT-CO3P00414 261 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 CSF1P09603 554 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 GSTT2P0CG29 244 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 DLSTP36957 453 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 VEGFCP49767 419 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 GRB2P62993 217 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 TNK1Q13470 666 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 ENDOGQ14249 297 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 Q5BKY6 102 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 OR10K2Q6IF99 312 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 THOC3Q96J01 351 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 CNTD2Q9H8S5 307 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 TAS2R8Q9NYW2 309 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 EMC3Q9P0I2 261 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 NCOR1O75376 2440 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 DOCK10Q96BY6 2186 aa18.63■□□□□ 0.57
CCDC88B-208ENST00000492980 TERTO14746 1132 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 OC90Q02509 493 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 ASCC1Q8N9N2 400 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 OR5D14Q8NGL3 314 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 PTX4Q96A99 478 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 DACT3Q96B18 629 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 GAL3ST1Q99999 423 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 SOX7Q9BT81 388 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 SF3B5Q9BWJ5 86 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 NOX3Q9HBY0 568 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 MYEF2Q9P2K5 600 aaKnown RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 PINLYPA6NC86 204 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 DHHO43323 396 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 PRAF2O60831 178 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 HPXP02790 462 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 CXCL3P19876 107 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 GUCA1AP43080 201 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 TMEM164Q5U3C3 297 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 ABHD12BQ7Z5M8 362 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 C20orf196Q8IYI0 205 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF283Q8N7M2 679 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 OR4C16Q8NGL9 310 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 GPX8Q8TED1 209 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms