RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 B9D1Q9UPM9 204 aa11.46□□□□□ -0.57
COL6A3-211ENST00000491233 POLR3KQ9Y2Y1 108 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-211ENST00000491233 INSIG2Q9Y5U4 225 aa11.46□□□□□ -0.57
COL6A3-211ENST00000491233 AUP1Q9Y679 476 aa11.46□□□□□ -0.57
COL6A3-211ENST00000491233 IGHV3-64DA0A0J9YX35 117 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 IQCF6A8MYZ5 107 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 H0YL77 283 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 ARPC3O15145 178 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 OR10H3O60404 316 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF205O95201 554 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 CYB5R3P00387 301 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 RPS2P15880 293 aaKnown RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 HIST1H1CP16403 213 aaKnown RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 FPR3P25089 353 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SRP9P49458 86 aaKnown RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SMIM11AP58511 58 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 RFX4Q33E94 735 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 KLF17Q5JT82 389 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SLC18B1Q6NT16 456 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SLC27A4Q6P1M0 643 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SIGLECL1Q8N7X8 197 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 ZMYND19Q96E35 227 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 PYURFQ96I23 114 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF582Q96NG8 517 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 IFT27Q9BW83 186 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 GORASP2Q9H8Y8 452 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 NTN4Q9HB63 628 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 SRA1Q9HD15 236 aaKnown RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 RPRD1BQ9NQG5 326 aaKnown RBP11.45□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF69Q9UC07 566 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 NUP50Q9UKX7 468 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 LRCH1Q9Y2L9 728 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 DOCK11Q5JSL3 2073 aa11.45□□□□□ -0.58
COL6A3-211ENST00000491233 NBEAL1Q6ZS30 2694 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 F5H5P2 479 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 IFNL4K9M1U5 179 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 ARPC2O15144 300 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 ACSM4P0C7M7 580 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 SELEP16581 610 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 RRM2P31350 389 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 KRTAP27-1Q3LI81 207 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 AWAT1Q58HT5 328 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 RBMS3Q6XE24 437 aaKnown RBP11.44□□□□□ -0.58
COL6A3-211ENST00000491233 MOGAT3Q86VF5 341 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 BCL6BQ8N143 479 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-211ENST00000491233 SDR9C7Q8NEX9 313 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 MCUR1Q96AQ8 359 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 NSMCE2Q96MF7 247 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 PITX2Q99697 317 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 ATF6BQ99941 703 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 SLC30A2Q9BRI3 323 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 SSBP3Q9BWW4 388 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-211ENST00000491233 HCAR1Q9BXC0 346 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 TENM1Q9UKZ4 2725 aa11.44□□□□□ -0.58
COL6A3-211ENST00000491233 OR6C68A6NDL8 312 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 DNAJC9-AS1A6NH13 148 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 F5H5K5 113 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 HLA-DQA2P01906 255 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 HLA-DPB1P04440 258 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 FABP3P05413 133 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 WNT2P09544 360 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 HSD17B1P14061 328 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 NOS3P29474 1203 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 MSX2P35548 267 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 GSSP48637 474 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 TRAP1Q12931 704 aaKnown RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 RSPO1Q2MKA7 263 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 TUSC1Q2TAM9 212 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 SLC36A3Q495N2 470 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 FAM201AQ5SY85 155 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF620Q6ZNG0 422 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 COLCA1Q6ZS62 124 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 DOK3Q7L591 496 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 ZBTB46Q86UZ6 589 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 KLBQ86Z14 1044 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 PGAM4Q8N0Y7 254 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 OR52E2Q8NGJ4 325 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 OR2AJ1Q8NGZ0 328 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 DUX5Q96PT3 197 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 C1QTNF5Q9BXJ0 243 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 NSRP1Q9H0G5 558 aaKnown RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 TMEM165Q9HC07 324 aa11.43□□□□□ -0.58
COL6A3-211ENST00000491233 PNRC2Q9NPJ4 139 aaKnown RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 MRPL22Q9NWU5 206 aaKnown RBP11.43□□□□□ -0.58
COL6A3-211ENST00000491233 IGHV3OR16-10A0A075B7F0 116 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 LRRC30A6NM36 301 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 SPRY1O43609 319 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 SNX3O60493 162 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 LCATP04180 440 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 GGT2P36268 569 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 IFNGR2P38484 337 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 GNB2P62879 340 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 PAX8Q06710 450 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 ECH1Q13011 328 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 GK2Q14410 553 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF181Q2M3W8 571 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF404Q494X3 552 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 SAMD4BQ5PRF9 694 aaKnown RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 SLC35F1Q5T1Q4 408 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms