RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TEX47Q8TBZ9 253 aa15.38■□□□□ 0.05
COL9A3-214ENST00000490398 PTP4A1Q93096 173 aa15.38■□□□□ 0.05
COL9A3-214ENST00000490398 DCLRE1CQ96SD1 692 aaKnown RBP15.38■□□□□ 0.05
COL9A3-214ENST00000490398 ATF6BQ99941 703 aa15.38■□□□□ 0.05
COL9A3-214ENST00000490398 SAP30LQ9HAJ7 183 aa15.38■□□□□ 0.05
COL9A3-214ENST00000490398 DECR2Q9NUI1 292 aa15.38■□□□□ 0.05
COL9A3-214ENST00000490398 IGHV1-69-2A0A0G2JMI3 117 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 PLSCR5A0PG75 271 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 FAM157AC9JC47 383 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 TGFAP01135 160 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 MT-ND5P03915 603 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 ADH4P08319 380 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 SPARCP09486 303 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 TMEM33P57088 247 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 MVKQ03426 396 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 C1QTNF5Q9BXJ0 243 aa15.37■□□□□ 0.05
COL9A3-214ENST00000490398 MALRD1Q5VYJ5 2156 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 RIIAD1A6NNX1 92 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 ZNF593O00488 134 aaPredicted RBP15.36■□□□□ 0.05
COL9A3-214ENST00000490398 LMX1BO60663 402 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 OSMP13725 252 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 RGS6P49758 472 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 DAPP51397 102 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 LMO4P61968 165 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 PCK2Q16822 640 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 FAM209AQ5JX71 171 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 SHQ1Q6PI26 577 aaKnown RBP15.36■□□□□ 0.05
COL9A3-214ENST00000490398 FBXW12Q6X9E4 464 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 SPATC1Q76KD6 591 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 DCXRQ7Z4W1 244 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 OR6K6Q8NGW6 343 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 APOBEC3DQ96AK3 386 aaPredicted RBP15.36■□□□□ 0.05
COL9A3-214ENST00000490398 OTULINQ96BN8 352 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 C1orf159Q96HA4 380 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 AMELYQ99218 206 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 YY1AP1Q9H869 796 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 CYSLTR2Q9NS75 346 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 KCNG2Q9UJ96 466 aa15.36■□□□□ 0.05
COL9A3-214ENST00000490398 H0YL77 283 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 IFNGP01579 166 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 LCATP04180 440 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 CD55P08174 381 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 RAC2P15153 192 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 ZNF3P17036 446 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 FMO3P31513 532 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 ENTPD1P49961 510 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 TNFAIP6P98066 277 aaPredicted RBP15.35■□□□□ 0.05
COL9A3-214ENST00000490398 CDK5Q00535 292 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 SNAI3Q3KNW1 292 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 SLC27A4Q6P1M0 643 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 PLBD1Q6P4A8 553 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 ATG16L2Q8NAA4 619 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 OR2Z1Q8NG97 314 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 ST7LQ8TDW4 575 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 CCL17Q92583 94 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 DDX28Q9NUL7 540 aaKnown RBP15.35■□□□□ 0.05
COL9A3-214ENST00000490398 ZDHHC8Q9ULC8 765 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 WIPI2Q9Y4P8 454 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 MXRA5Q9NR99 2828 aa15.35■□□□□ 0.05
COL9A3-214ENST00000490398 SURF4O15260 269 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 MITFO75030 526 aaPredicted RBP15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ATP5HO75947 161 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ANXA8P13928 327 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 HOXB6P17509 224 aaKnown RBP15.34■□□□□ 0.05
COL9A3-214ENST00000490398 TUBG1P23258 451 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 LIPAP38571 399 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 PRKXP51817 358 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 CDH15P55291 814 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ECH1Q13011 328 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 GK2Q14410 553 aaPredicted RBP15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ATP6AP1Q15904 470 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 C1orf146Q5VVC0 180 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 FAM166AQ6J272 317 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 FAHD1Q6P587 224 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ZNF771Q7L3S4 317 aaPredicted RBP15.34■□□□□ 0.05
COL9A3-214ENST00000490398 AMIGO2Q86SJ2 522 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 BHLHE23Q8NDY6 225 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 BBS1Q8NFJ9 593 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 HPS1Q92902 700 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 SLAMF6Q96DU3 332 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ZMYND19Q96E35 227 aaPredicted RBP15.34■□□□□ 0.05
COL9A3-214ENST00000490398 ELMOD3Q96FG2 381 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 OR51V1Q9H2C8 321 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 LPAR2Q9HBW0 351 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 TUBG2Q9NRH3 451 aa15.34■□□□□ 0.05
COL9A3-214ENST00000490398 IGHV3-64DA0A0J9YX35 117 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 J3QW42 95 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 M0R135 149 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 MLNRO43193 412 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 DEAF1O75398 565 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-214ENST00000490398 SLC2A1P11166 492 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 GSTT1P30711 240 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 OTX1P32242 354 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-214ENST00000490398 RASSF2P50749 326 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 HFEQ30201 348 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 TEX30Q5JUR7 227 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 FAM120AOSQ5T036 256 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 ASRGL1Q7L266 308 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 DPY19L4Q7Z388 723 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 ERI1Q8IV48 349 aaKnown RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms