RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SLCO5A1Q9H2Y9 848 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 MOB1AQ9H8S9 216 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 GPR35Q9HC97 309 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 PARPBPQ9NWS1 579 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 DAPK2Q9UIK4 370 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 CLEC4AQ9UMR7 237 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 LOC107986453A0A1B0GWG9 222 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 FIGNL2A6NMB9 653 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 HPGDSO60760 199 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 SLC19A2O60779 497 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 WDR1O75083 606 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 TMEM127O75204 238 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 MRPL33O75394 65 aaKnown RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 TTRP02766 147 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 GRB2P62993 217 aaKnown RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 ZNF79Q15937 498 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 ZNF181Q2M3W8 571 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 TMEM244Q5VVB8 128 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 RTL6Q6ICC9 239 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 P4HA3Q7Z4N8 544 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 ELMOD2Q8IZ81 293 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 TSEN15Q8WW01 171 aaKnown RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 DIRAS2Q96HU8 199 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 SDHCQ99643 169 aaPredicted RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 CCDC32Q9BV29 185 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 SLITRK2Q9H156 845 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 NUFIP1Q9UHK0 495 aaKnown RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 ADAM30Q9UKF2 790 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 HHLA2Q9UM44 414 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 AK6Q9Y3D8 172 aaKnown RBP12.45□□□□□ -0.42
CUX1-209ENST00000487284 FAM215AQ9Y5M1 114 aa12.45□□□□□ -0.42
CUX1-209ENST00000487284 TRAV8-7A0A075B6U6 113 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 OR6C65A6NJZ3 312 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 PRRG2O14669 202 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 CST2P09228 141 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 SLC2A2P11168 524 aaPredicted RBP12.44□□□□□ -0.42
CUX1-209ENST00000487284 FCGR2AP12318 317 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 GABRA1P14867 456 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 ZNF12P17014 697 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 ATF1P18846 271 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 HSD11B1P28845 292 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 EVX1P49640 407 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 TAF13Q15543 124 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 CEACAM16Q2WEN9 425 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 TSPO2Q5TGU0 170 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 C3P1Q6ZMU1 363 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 LRRTM1Q86UE6 522 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 SNX29P2Q8IUI4 249 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 TUSC5Q8IXB3 177 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 RPRMLQ8N4K4 120 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 ASB5Q8WWX0 329 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 FOXB1Q99853 325 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 SOSTQ9BQB4 213 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 GP6Q9HCN6 339 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 TCF7L1Q9HCS4 588 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 ABRACLQ9P1F3 81 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 ZNF835Q9Y2P0 537 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 POLEQ07864 2286 aa12.44□□□□□ -0.42
CUX1-209ENST00000487284 A0A1B0GVG6 124 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 RPL36A-HNRNPH2H7BZ11 118 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 TBX1O43435 398 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 CD2P06729 351 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 YES1P07947 543 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ACSM4P0C7M7 580 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ADRA2CP18825 462 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 FSTP19883 344 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 OTX1P32242 354 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 RBPJQ06330 500 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 NRN1LQ496H8 165 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 CCDC92Q53HC0 331 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 C1orf185Q5T7R7 199 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 NSUN5P2Q63ZY6 315 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 CNIH2Q6PI25 160 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 METAP1DQ6UB28 335 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 SEM1Q6ZVN7 128 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 LRRC28Q86X40 367 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 DOLPP1Q86YN1 238 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 MCEMP1Q8IX19 187 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 LRRC18Q8N456 261 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 C9orf106Q8NAJ2 232 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ST6GALNAC3Q8NDV1 305 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 CHPT1Q8WUD6 406 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 FBXO17Q96EF6 278 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 KCNJ15Q99712 375 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 SRRQ9GZT4 340 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 PBOV1Q9GZY1 135 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 TP63Q9H3D4 680 aaPredicted RBP12.43□□□□□ -0.42
CUX1-209ENST00000487284 CALHM2Q9HA72 323 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 SLC7A10Q9NS82 523 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 TINAGQ9UJW2 476 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 DHDHQ9UQ10 334 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 V9GY05 133 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 ISPDA4D126 451 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 FABP12A6NFH5 140 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 IFITM5A6NNB3 132 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 H3BSH0 61 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 AIPO00170 330 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 PTBP1P26599 531 aaKnown RBP eCLIP12.43□□□□□ -0.42
CUX1-209ENST00000487284 PTGER4P35408 488 aa12.43□□□□□ -0.42
CUX1-209ENST00000487284 PRKXP51817 358 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms