RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 H3BSA7 217 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 H7C1Q1 480 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 H7C417 338 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 M0R135 149 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PHYHO14832 338 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PRODHO43272 600 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SPRY3O43610 288 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 TLX2O43763 284 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 GLCEO94923 617 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 LYNP07948 512 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 IGFBP1P08833 259 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 MMP7P09237 267 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 DANCRP0C864 163 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF35P13682 527 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 IRF2P14316 349 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 DAOP14920 347 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SLC25A16P16260 332 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF26P17031 533 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 RAB6AP20340 208 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 NAA10P41227 235 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 EVX1P49640 407 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF81P51508 661 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 FXYD6P3P58550 94 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 HGFACQ04756 655 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SLC3A1Q07837 685 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MZT1Q08AG7 82 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 FHL1Q13642 323 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 APOFQ13790 326 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ENDOGQ14249 297 aaKnown RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 GGTLC2Q14390 218 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PTGES3Q15185 160 aaKnown RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 EFNB3Q15768 340 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 TSTQ16762 297 aaKnown RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 HFEQ30201 348 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PCGF3Q3KNV8 242 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SLC35D3Q5M8T2 416 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 TMEM236Q5W0B7 351 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 OTPQ5XKR4 325 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF770Q6IQ21 691 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 KCTD18Q6PI47 426 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 NHLRC1Q6VVB1 395 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SPNS3Q6ZMD2 512 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PGAP1Q75T13 922 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 TMEM179BQ7Z7N9 219 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZBTB46Q86UZ6 589 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MYPOPQ86VE0 399 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 CPOQ8IVL8 374 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 FTMTQ8N4E7 242 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 WFDC11Q8NEX6 87 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SLC26A10Q8NG04 563 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 OR4Q3Q8NH05 313 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 LILRB1Q8NHL6 650 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 FAM81AQ8TBF8 368 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SLCO4A1Q96BD0 722 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZMYND19Q96E35 227 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF799Q96GE5 643 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 PGAM5Q96HS1 289 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MEGF10Q96KG7 1140 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 C18orf12Q96KH6 178 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF582Q96NG8 517 aaPredicted RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 DIRC2Q96SL1 478 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 COQ7Q99807 217 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MROQ9BYG7 248 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MRPL37Q9BZE1 423 aaKnown RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 OR2J1Q9GZK6 312 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 MED20Q9H944 212 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 SAP30LQ9HAJ7 183 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 S100A14Q9HCY8 104 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 HINT3Q9NQE9 182 aaKnown RBP6.92□□□□□ -1.3
USP40-216ENST00000485943 ZNF224Q9NZL3 707 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 DNAJC27Q9NZQ0 273 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ATPIF1Q9UII2 106 aa6.92□□□□□ -1.3
USP40-216ENST00000485943 ITPR2Q14571 2701 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 IGLV1-36A0A0B4J1U3 117 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 LOC390937A0A1W2PQ73 354 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ZNF670-ZNF695F2Z2N8 137 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 NDUFS8O00217 210 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 EI24O14681 340 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PPIHO43447 177 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 MRPL3P09001 348 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 INHBBP09529 407 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 NAT2P11245 290 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 TNFRSF1AP19438 455 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CFL1P23528 166 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 GNALP38405 381 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CX3CR1P49238 355 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 DAPP51397 102 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PRKXP51817 358 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CDH15P55291 814 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 MAD2L1BPQ15013 274 aaPredicted RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 TRIP10Q15642 601 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 SNCBQ16143 134 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ZIK1Q3SY52 487 aaPredicted RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 FAM209AQ5JX71 171 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CLEC9AQ6UXN8 241 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 FOXL2NBQ6ZUU3 175 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ZNF771Q7L3S4 317 aaPredicted RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 FAM220AQ7Z4H9 259 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 OR5AS1Q8N127 324 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PARP8Q8N3A8 854 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms