RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 ANGPTL5Q86XS5 388 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 GID4Q8IVV7 300 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PLPP7Q8NBV4 271 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 DNAAF1Q8NEP3 725 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 MAFIPQ8WZ33 124 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 RAB24Q969Q5 203 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 YPEL4Q96NS1 127 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 MTERF1Q99551 399 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 OR51V1Q9H2C8 321 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 TUBA4BQ9H853 241 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 BCO1Q9HAY6 547 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 MIEF1Q9NQG6 463 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 TMEM100Q9NV29 134 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PADI1Q9ULC6 663 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FARSAQ9Y285 508 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 HS3ST3B1Q9Y662 390 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ZFHX2Q9C0A1 2572 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 ANKRD20A5PA0PJZ0 165 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 EMC8O43402 210 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FADS1O60427 444 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 TMEM127O75204 238 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 VAMP5O95183 116 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 H1F0P07305 194 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 ZGLP1P0C6A0 271 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 CDX1P47902 265 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 GSK3AP49840 483 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTBP60709 375 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTA2P62736 377 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTG1P63261 375 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTG2P63267 376 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTC1P68032 377 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTA1P68133 377 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FAM189A2Q15884 450 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PNLIPRP3Q17RR3 467 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PLEKHN1Q494U1 663 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 ACTBL2Q562R1 376 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 RNASE10Q5GAN6 216 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 TCTN3Q6NUS6 607 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ANKRD37Q7Z713 158 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PXKQ7Z7A4 578 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 DND1Q8IYX4 353 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 ZNF664Q8N3J9 261 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 OR56B2PQ8NGI1 322 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ADAD1Q96M93 576 aaKnown RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 NRIP2Q9BQI9 281 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 CNTNAP3Q9BZ76 1288 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 TMEM185BQ9H7F4 350 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 TREM1Q9NP99 234 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 MMP26Q9NRE1 261 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 STARD5Q9NSY2 213 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PARPBPQ9NWS1 579 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 SLC35A3Q9Y2D2 325 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 SIRT4Q9Y6E7 314 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 FREM2Q5SZK8 3169 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FEZF1A0PJY2 475 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 F13BP05160 661 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FURINP09958 794 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ZNF888P0CJ79 500 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 HNF1AP20823 631 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 F2RL1P55085 397 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 SLC26A5P58743 744 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 CD81P60033 236 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 Q0VFX4 171 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 FUT7Q11130 342 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 HYAL4Q2M3T9 481 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 NKAPLQ5M9Q1 402 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 CPTPQ5TA50 214 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 IL34Q6ZMJ4 242 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ESPNLQ6ZVH7 1005 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 SZRD1Q7Z422 152 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 MMP21Q8N119 569 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 NEK7Q8TDX7 302 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 PSMF1Q92530 271 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 DIRC2Q96SL1 478 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 NDC1Q9BTX1 674 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 SEC61A2Q9H9S3 476 aa6.87□□□□□ -1.31
USP4-211ENST00000485450 ZNF223Q9UK11 482 aaPredicted RBP6.87□□□□□ -1.31
USP4-211ENST00000485450 TMEM272A0A1B0GTI8 110 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 A6NLC8 198 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 H7C1Q1 480 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 RNASET2O00584 256 aaKnown RBP6.86□□□□□ -1.31
USP4-211ENST00000485450 ARAFP10398 606 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 SNRPBP14678 240 aaKnown RBP6.86□□□□□ -1.31
USP4-211ENST00000485450 THBS4P35443 961 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 SKP1P63208 163 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 FAM27D1Q5T7N8 215 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 LANCL3Q6ZV70 420 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 SSX6Q7RTT6 188 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 TMPRSS11BQ86T26 416 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 UBAC2Q8NBM4 344 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 MORN4Q8NDC4 146 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 SDR9C7Q8NEX9 313 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 OR2G2Q8NGZ5 317 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 OR52I2Q8NH67 350 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 RERGQ96A58 199 aaPredicted RBP6.86□□□□□ -1.31
USP4-211ENST00000485450 TNFSF18Q9UNG2 199 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 ANGPT4Q9Y264 503 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 A0A087WV62 115 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 AHRRA9YTQ3 701 aa6.86□□□□□ -1.31
USP4-211ENST00000485450 PYCARD-AS1I3L0S3 204 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms