RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RRNAD1Q96FB5 475 aaKnown RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 GDF2Q9UK05 429 aaPredicted RBP11.92□□□□□ -0.5
USP40-214ENST00000483519 HHLA2Q9UM44 414 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 LHX6Q9UPM6 363 aa11.92□□□□□ -0.5
USP40-214ENST00000483519 LOC390937A0A1W2PQ73 354 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 EIF2S3LQ2VIR3 472 aaKnown RBP11.91□□□□□ -0.5
USP40-214ENST00000483519 RNF212Q495C1 297 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 FAM76BQ5HYJ3 339 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 OR51A2Q8NGJ7 313 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 PPP1R14AQ96A00 147 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 FAM46BQ96A09 425 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 KTI12Q96EK9 354 aaPredicted RBP11.91□□□□□ -0.5
USP40-214ENST00000483519 CCDC3Q9BQI4 270 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 TWSG1Q9GZX9 223 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 NIT2Q9NQR4 276 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 DHCR7Q9UBM7 475 aaKnown RBP11.91□□□□□ -0.5
USP40-214ENST00000483519 MBTPS2O43462 519 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 SCGNO76038 276 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 PVRP15151 417 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 ACTR1BP42025 376 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 LSSP48449 732 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 ACTR1AP61163 376 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 DLX2Q07687 328 aaPredicted RBP11.91□□□□□ -0.5
USP40-214ENST00000483519 EIF2B1Q14232 305 aaKnown RBP11.91□□□□□ -0.5
USP40-214ENST00000483519 SGCAQ16586 387 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 OR52W1Q6IF63 320 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 PRSS54Q6PEW0 395 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 CHST4Q8NCG5 386 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 OR14C36Q8NHC7 312 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 C14orf79Q96F83 325 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 ARL5BQ96KC2 179 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 PCOLCE2Q9UKZ9 415 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 B9D1Q9UPM9 204 aa11.91□□□□□ -0.5
USP40-214ENST00000483519 TBC1D3DA0A087WVF3 549 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 TBC1D3LB9A6J9 549 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 MFNGO00587 321 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 TBC1D3HP0C7X1 549 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 PET100P0DJ07 73 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 ANKRD39Q53RE8 183 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 TBC1D3CQ6IPX1 549 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 TBC1D3Q8IZP1 549 aaPredicted RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 GVQW1Q8N7I0 195 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 DTWD2Q8NBA8 298 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 PHOSPHO1Q8TCT1 267 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 SLC39A7Q92504 469 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 AQP10Q96PS8 301 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 PCDHGA1Q9Y5H4 931 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 POMT1Q9Y6A1 747 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 C2orf74A8MZ97 194 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 RAB27BO00194 218 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 EIF1BO60739 113 aaKnown RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 ICOSLGO75144 302 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 LYL1P12980 280 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 S100PP25815 95 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 EIF1P41567 113 aaKnown RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 SKP2Q13309 424 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 BIKQ13323 160 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 RBM39Q14498 530 aaKnown RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 TMEM128Q5BJH2 165 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 RBMS3Q6XE24 437 aaKnown RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 RD3Q7Z3Z2 195 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 NAA40Q86UY6 237 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 ZNF561Q8N587 486 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 C16orf52Q8NHV5 167 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 METTL21AQ8WXB1 218 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 DGAT2Q96PD7 388 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 ELF4Q99607 663 aaPredicted RBP11.9□□□□□ -0.5
USP40-214ENST00000483519 OR51M1Q9H341 326 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 RAB18Q9NP72 206 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 ASH2LQ9UBL3 628 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 LRP12Q9Y561 859 aa11.9□□□□□ -0.5
USP40-214ENST00000483519 H0YIZ8 118 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 SLC31A1O15431 190 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 F2RL1P55085 397 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 HMGN3Q15651 99 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 ELAVL1Q15717 326 aaKnown RBP11.89□□□□□ -0.51
USP40-214ENST00000483519 CD226Q15762 336 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 FAM78AQ5JUQ0 283 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 OR4D6Q8NGJ1 314 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 OR9A4Q8NGU2 314 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 ZNF563Q8TA94 476 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 OR1E3Q8WZA6 343 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 TAAR8Q969N4 342 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 SULT4A1Q9BR01 284 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 SEBOXQ9HB31 216 aaPredicted RBP11.89□□□□□ -0.51
USP40-214ENST00000483519 OR2S2Q9NQN1 319 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 UBQLN4Q9NRR5 601 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 BRWD1Q9NSI6 2320 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 FANCMQ8IYD8 2048 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 LOC107986453A0A1B0GWG9 222 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 SCDO00767 359 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 YKT6O15498 198 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 MED6O75586 246 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 CD5P06127 495 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 CBR1P16152 277 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 PPT1P50897 306 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 FNDC7Q5VTL7 733 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 OTPQ5XKR4 325 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 ZNF776Q68DI1 518 aaPredicted RBP11.89□□□□□ -0.51
USP40-214ENST00000483519 POMZP3Q6PJE2 187 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms