RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM220AQ7Z4H9 259 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 PAQR4Q8N4S7 273 aaPredicted RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 ZNF799Q96GE5 643 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 C4orf36Q96KX1 117 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 SIGLEC11Q96RL6 698 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 DCLRE1CQ96SD1 692 aaKnown RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 CDCA4Q9BXL8 241 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 NIPAL2Q9H841 368 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 ISG20L2Q9H9L3 353 aaKnown RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 EIF3KQ9UBQ5 218 aaKnown RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 ERGIC3Q9Y282 383 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 CAB39Q9Y376 341 aaPredicted RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 N6AMT1Q9Y5N5 214 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 ADGRG4Q8IZF6 3080 aa10.6□□□□□ -0.71
SDC1-206ENST00000482879 GCN1Q92616 2671 aaKnown RBP10.6□□□□□ -0.71
SDC1-206ENST00000482879 ABCD4O14678 606 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 MYL12BO14950 172 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 MRPS14O60783 128 aaKnown RBP10.59□□□□□ -0.71
SDC1-206ENST00000482879 ABHD16AO95870 558 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 APOC1P02654 83 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 MT-ND5P03915 603 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 CD3EP07766 207 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 HTR1AP08908 422 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 ACSM4P0C7M7 580 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 CALCRP30988 508 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 OTX1P32242 354 aaPredicted RBP10.59□□□□□ -0.71
SDC1-206ENST00000482879 DCTDP32321 178 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 SLC6A9P48067 706 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 CX3CR1P49238 355 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 IRF3Q14653 427 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 LIPNQ5VXI9 398 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 ARL9Q6T311 187 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 DRAM2Q6UX65 266 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 NAA40Q86UY6 237 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 EGFL6Q8IUX8 553 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 SYS1Q8N2H4 156 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 PIAS4Q8N2W9 510 aaPredicted RBP10.59□□□□□ -0.71
SDC1-206ENST00000482879 NANOGP1Q8N7R0 232 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 OR52N1Q8NH53 320 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 SPRYD4Q8WW59 207 aaPredicted RBP10.59□□□□□ -0.71
SDC1-206ENST00000482879 PIK3IP1Q96FE7 263 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 RADILQ96JH8 1075 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 C4orf45Q96LM5 186 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 BRD7Q9NPI1 651 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 KCNN3Q9UGI6 736 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 SNX5Q9Y5X3 404 aa10.59□□□□□ -0.71
SDC1-206ENST00000482879 TMEM269A0A1B0GVZ9 245 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 TMEM129A0AVI4 362 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 TRIM64A6NGJ6 449 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 DEFB108AA8MXU0 73 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 ATP6V1G2-DDX39BF2Z307 99 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 SIAH2O43255 324 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 LCATP04180 440 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 ANXA2P07355 339 aaKnown RBP10.58□□□□□ -0.72
SDC1-206ENST00000482879 SLC2A1P11166 492 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 COX6B1P14854 86 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 PSMB10P40306 273 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 WNT5AP41221 380 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 MAP2K4P45985 399 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 GBX2P52951 348 aaPredicted RBP10.58□□□□□ -0.72
SDC1-206ENST00000482879 NR1H2P55055 460 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 ZNF121P58317 390 aaPredicted RBP10.58□□□□□ -0.72
SDC1-206ENST00000482879 HGFACQ04756 655 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 SPOCK1Q08629 439 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 DAZAP2Q15038 168 aaPredicted RBP10.58□□□□□ -0.72
SDC1-206ENST00000482879 ZNF829Q3KNS6 432 aaPredicted RBP10.58□□□□□ -0.72
SDC1-206ENST00000482879 ZNF773Q6PK81 442 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 SLC22A25Q6T423 547 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 GATAD2BQ8WXI9 593 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 PELI1Q96FA3 418 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 PSMG3-AS1Q96PY0 264 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 MND1Q9BWT6 205 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 OR51B6Q9H340 312 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 ZNF696Q9H7X3 374 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 SP140LQ9H930 580 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 ACOXLQ9NUZ1 547 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 GTF2A1LQ9UNN4 478 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 SPEF1Q9Y4P9 236 aa10.58□□□□□ -0.72
SDC1-206ENST00000482879 LOC110117498-PIK3R3F6TDL0 507 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 PNPP00491 289 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 NGFP01138 241 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 FAM157BP0CG42 384 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 NR4A1P22736 598 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 PCSK6P29122 969 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 RAD52P43351 418 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 RGS6P49758 472 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 UCP2P55851 309 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 WNT4P56705 351 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 PSMA6P60900 246 aaKnown RBP10.57□□□□□ -0.72
SDC1-206ENST00000482879 ADAM5Q6NVV9 412 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 UNQ6126/PRO20091Q6UXV3 157 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 FAM57BQ71RH2 274 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 KLBQ86Z14 1044 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 SPARTQ8N0X7 666 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 SVOPQ8N4V2 548 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 TSPAN14Q8NG11 270 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 ABHD4Q8TB40 342 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 RORBQ92753 470 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 APOBEC3DQ96AK3 386 aaPredicted RBP10.57□□□□□ -0.72
SDC1-206ENST00000482879 PGAM5Q96HS1 289 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms