RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MSL2Q9HCI7 577 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 TVP23BQ9NYZ1 205 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 CHD3Q12873 2000 aaKnown RBP12.13□□□□□ -0.47
VAMP4-203ENST00000474047 CSPG4Q6UVK1 2322 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 SURF4O15260 269 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 PPIHO43447 177 aaKnown RBP12.12□□□□□ -0.47
VAMP4-203ENST00000474047 CD5LO43866 347 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 GLCEO94923 617 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 RAC2P15153 192 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 TNFSF4P23510 183 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 MMP15P51511 669 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 CHN2P52757 468 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 MRPS11P82912 194 aaKnown RBP12.12□□□□□ -0.47
VAMP4-203ENST00000474047 EIF2B1Q14232 305 aaKnown RBP12.12□□□□□ -0.47
VAMP4-203ENST00000474047 HLXQ14774 488 aaPredicted RBP12.12□□□□□ -0.47
VAMP4-203ENST00000474047 FAHD1Q6P587 224 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 CPOQ8IVL8 374 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 OR6N2Q8NGY6 317 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 HAVCR1Q96D42 359 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 ENOPH1Q9UHY7 261 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 VPS13CQ709C8 3753 aa12.12□□□□□ -0.47
VAMP4-203ENST00000474047 A0A096LNT2 108 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 IGHV4-61A0A0C4DH41 118 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 IGHV1-69-2A0A0G2JMI3 117 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 TLX2O43763 284 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 NCR1O76036 304 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 IGHV1-46P01743 117 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ACSM4P0C7M7 580 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 KITLGP21583 273 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 SLC15A1P46059 708 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 GZMKP49863 264 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 TMEM33P57088 247 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ESRRGP62508 458 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 RIN1Q13671 783 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 HFEQ30201 348 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 FAM209AQ5JX71 171 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 USP51Q70EK9 711 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 SPATC1Q76KD6 591 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 PYDC1Q8WXC3 89 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 SLAMF6Q96DU3 332 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 CENPNQ96H22 339 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 SLC25A19Q9HC21 320 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF275Q9NSD4 429 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 N6AMT1Q9Y5N5 214 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ZSCAN5BA6NJL1 495 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 INAFM1C9JVW0 142 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 M0R135 149 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 TNFAIP6P98066 277 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 KPNB1Q14974 876 aaKnown RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 PTGES3Q15185 160 aaKnown RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 TEX30Q5JUR7 227 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 CXXC5Q7LFL8 322 aaKnown RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 SHFQ7M4L6 423 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 OR5AS1Q8N127 324 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 PARP8Q8N3A8 854 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 OR2Z1Q8NG97 314 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 YIPF5Q969M3 257 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ZMYND19Q96E35 227 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ELMOD3Q96FG2 381 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF799Q96GE5 643 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF582Q96NG8 517 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 RAB3IPQ96QF0 476 aaPredicted RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 C1QTNF5Q9BXJ0 243 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 PNRC2Q9NPJ4 139 aaKnown RBP12.11□□□□□ -0.47
VAMP4-203ENST00000474047 HIVEP2P31629 2446 aa12.11□□□□□ -0.47
VAMP4-203ENST00000474047 ABCA1O95477 2261 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 LRP5LA4QPB2 252 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 A8MV72 311 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF878C9JN71 531 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 PRODHO43272 600 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 SELEP16581 610 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 HSD11B1P28845 292 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 CRYBB2P43320 205 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 PRKXP51817 358 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 ACTR3P61158 418 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 KRTAP1-1Q07627 177 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 RSPO1Q2MKA7 263 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 TMEM255AQ5JRV8 349 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 LINC01590Q5TEZ4 76 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 OR2T2Q6IF00 324 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 ZFP1Q6P2D0 407 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 FBXW12Q6X9E4 464 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 MRPL21Q7Z2W9 205 aaKnown RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 DPY19L4Q7Z388 723 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 NAA40Q86UY6 237 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF283Q8N7M2 679 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 CCL17Q92583 94 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 TIMD4Q96H15 378 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 NARFLQ9H6Q4 476 aa12.1□□□□□ -0.47
VAMP4-203ENST00000474047 H2AFY2Q9P0M6 372 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 SETD2Q9BYW2 2564 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 ZNF469Q96JG9 3925 aaPredicted RBP12.1□□□□□ -0.47
VAMP4-203ENST00000474047 TLN2Q9Y4G6 2542 aa12.09□□□□□ -0.47
VAMP4-203ENST00000474047 MITFO75030 526 aaPredicted RBP12.09□□□□□ -0.47
VAMP4-203ENST00000474047 IGFBP5P24593 272 aa12.09□□□□□ -0.47
VAMP4-203ENST00000474047 GRB2P62993 217 aaKnown RBP12.09□□□□□ -0.47
VAMP4-203ENST00000474047 CDK5R2Q13319 367 aa12.09□□□□□ -0.47
VAMP4-203ENST00000474047 TRIP10Q15642 601 aa12.09□□□□□ -0.47
VAMP4-203ENST00000474047 PCK2Q16822 640 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms