RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	MRPL55	Q7Z7F7	128 aa	Known RBP	2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	CBR4	Q8N4T8	237 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	JAGN1	Q8N5M9	183 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR4K5	Q8NGD3	323 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR6Q1	Q8NGQ2	317 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR6N1	Q8NGY5	312 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	SYNPR	Q8TBG9	265 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	TCEAL3	Q969E4	200 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	FLYWCH2	Q96CP2	140 aa	Known RBP	2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	NRBF2	Q96F24	287 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	RSPO3	Q9BXY4	272 aa	Predicted RBP	2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR52D1	Q9H346	318 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	ZNF282	Q9UDV7	671 aa	Predicted RBP	2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	MTFP1	Q9UDX5	166 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	GGA2	Q9UJY4	613 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	TBC1D24	Q9ULP9	559 aa		2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	TSSC4	Q9Y5U2	329 aa	Predicted RBP	2.18	□□□□□ -2.06
PTCD3-209	ENST00000472044	GAK	O14976	1311 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	TRAV25	A0A0B4J276	109 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044		A0A0J9YXV3	536 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	PDZK1P1	A8MUH7	402 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044		L7N2F9	121 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044		M0R3G1	203 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	SLC9A3R1	O14745	358 aa	Predicted RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	CDC40	O60508	579 aa	Known RBP eCLIP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	RDH16	O75452	317 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	REM1	O75628	298 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	HLA-H	P01893	362 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	CD74	P04233	296 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	CLTA	P09496	248 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR8G3P	P0DMU2	310 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	C1GALT1C1L	P0DN25	315 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	ANXA8	P13928	327 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	RAB4A	P20338	218 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OPRK1	P41145	380 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	CLDN18	P56856	261 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	RPS23	P62266	143 aa	Known RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	ILK	Q13418	452 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	ANXA8L1	Q5VT79	327 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	SHISA6	Q6ZSJ9	500 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	SLC16A13	Q7RTY0	426 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	APRG1	Q8IVJ8	170 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	FAM71A	Q8IYT1	594 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OFCC1	Q8IZS5	231 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	COMMD1	Q8N668	190 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	C8orf31	Q8N9H6	132 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR11H7	Q8NGC8	314 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR56A4	Q8NGH8	313 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	ZNF461	Q8TAF7	563 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	LRRC29	Q8WV35	223 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	ESR2	Q92731	530 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	JSRP1	Q96MG2	331 aa	Predicted RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	RNF145	Q96MT1	663 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	OPALIN	Q96PE5	141 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	HSD17B10	Q99714	261 aa	Known RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	SAMD10	Q9BYL1	202 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	EDA2R	Q9HAV5	297 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	MRM3	Q9HC36	420 aa	Known RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	CCNB1IP1	Q9NPC3	277 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	MED4	Q9NPJ6	270 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	AGPAT4	Q9NRZ5	378 aa		2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	RCL1	Q9Y2P8	373 aa	Known RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	BRCA1	P38398	1863 aa	Known RBP	2.17	□□□□□ -2.06
PTCD3-209	ENST00000472044	TRAV6	A0A075B6T7	132 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	IGHV3OR16-9	A0A0B4J2B5	98 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	IGKV1-8	A0A0C4DH67	115 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	TSPAN11	A1L157	253 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	DNAJB6	O75190	326 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR8U9	P0C7N5	309 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	USF1	P22415	310 aa	Predicted RBP	2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	NPY1R	P25929	384 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	RBM34	P42696	430 aa	Known RBP	2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	CXCL12	P48061	93 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	CDKN2D	P55273	166 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	GFER	P55789	205 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	SNX20	Q7Z614	316 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	MICU2	Q8IYU8	434 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	LGI3	Q8N145	548 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	ARRDC1	Q8N5I2	433 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	NECAP1	Q8NC96	275 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	OR10G6	Q8NH81	332 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	C17orf50	Q8WW18	174 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	BTN2A3P	Q96KV6	586 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	ZNF488	Q96MN9	340 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	ZNF317	Q96PQ6	595 aa	Predicted RBP	2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	RNF157	Q96PX1	679 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	RNF5	Q99942	180 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	FOXC2	Q99958	501 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	SCRT1	Q9BWW7	348 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	TEKT3	Q9BXF9	490 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	SLC7A5P2	Q9GIP4	190 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	LYRM4	Q9HD34	91 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	ZDHHC4	Q9NPG8	344 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	ACP6	Q9NPH0	428 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	UBN2	Q6ZU65	1347 aa		2.16	□□□□□ -2.06
PTCD3-209	ENST00000472044	COLCA2	A8K830	154 aa		2.15	□□□□□ -2.07
PTCD3-209	ENST00000472044		H0YJW9	148 aa		2.15	□□□□□ -2.07
PTCD3-209	ENST00000472044		H7C1H1	209 aa		2.15	□□□□□ -2.07
PTCD3-209	ENST00000472044	FCN3	O75636	299 aa		2.15	□□□□□ -2.07
PTCD3-209	ENST00000472044	CCNK	O75909	580 aa		2.15	□□□□□ -2.07

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