RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR4A8P0C604 315 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC2A5P22732 501 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 PEX2P28328 305 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 ENTPD1P49961 510 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 GDI2P50395 445 aaKnown RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 HIST1H3AP68431 136 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 EFNB1P98172 346 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 HGFACQ04756 655 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 ADIPOQQ15848 244 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 LRRC36Q1X8D7 754 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 ZIK1Q3SY52 487 aaPredicted RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 KLHL12Q53G59 568 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CCDC92Q53HC0 331 aaPredicted RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC35D3Q5M8T2 416 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 HIST2H3PS2Q5TEC6 136 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 LPCAT4Q643R3 524 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC18B1Q6NT16 456 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF774Q6NX45 483 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CORO6Q6QEF8 472 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 TREML4Q6UXN2 200 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 HIST2H3AQ71DI3 136 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 VASH1Q7L8A9 365 aaPredicted RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 TCEANCQ8N8B7 351 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 BBS1Q8NFJ9 593 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 GJC3Q8NFK1 279 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 OR2AJ1Q8NGZ0 328 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 TMEM163Q8TC26 289 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 POM121L2Q96KW2 1035 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 RDH12Q96NR8 316 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CDADC1Q9BWV3 514 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 PLK3Q9H4B4 646 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 WDR76Q9H967 626 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 MARCH7Q9H992 704 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CYB5R1Q9UHQ9 305 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 NDRG4Q9ULP0 352 aaKnown RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CMYA5Q8N3K9 4069 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 LOC100509620A0A075B734 347 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 OR6C6A6NF89 314 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 TRIM77I1YAP6 450 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SYNGR3O43761 229 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SPARCP09486 303 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PSKH1P11801 424 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 CCL2P13500 99 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 NR4A1P22736 598 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 GSTT1P30711 240 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 RPS27P42677 84 aaKnown RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 HTR5AP47898 357 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PPOXP50336 477 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 CDC42P60953 191 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 GALK2Q01415 458 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SNTB2Q13425 540 aaKnown RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 APOFQ13790 326 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PCK2Q16822 640 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 TEX30Q5JUR7 227 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 ELFN2Q5R3F8 820 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 OGFRL1Q5TC84 451 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 NXNL2Q5VZ03 156 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 KRT80Q6KB66 452 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 VHLLQ6RSH7 139 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 CFAP77Q6ZQR2 320 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 LINC00346Q8IVM7 164 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PAQR4Q8N4S7 273 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PACRGLQ8N7B6 248 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 OR8J1Q8NGP2 316 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SORCS2Q96PQ0 1159 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 IL4I1Q96RQ9 567 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 INTS14Q96SY0 518 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 PITX2Q99697 317 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 VRK1Q99986 396 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF747Q9BV97 191 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 HDHD2Q9H0R4 259 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 RNPEPL1Q9HAU8 725 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 MYOZ1Q9NP98 299 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SMPD3Q9NY59 655 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 NKX1-2Q9UD57 310 aaPredicted RBP10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 ATPIF1Q9UII2 106 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 SPEF1Q9Y4P9 236 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 NBEAL2Q6ZNJ1 2754 aa10.19□□□□□ -0.78
SQSTM1-206ENST00000466342 LOC390937A0A1W2PQ73 354 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 C5orf49A4QMS7 147 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 CCDC182A6NF36 153 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF593O00488 134 aaPredicted RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 DLGAP1O14490 977 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 CCNOP22674 350 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 THBS4P35443 961 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 RPS7P62081 194 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC34A1Q06495 639 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 AWAT1Q58HT5 328 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 AADACL4Q5VUY2 407 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 SHISA2Q6UWI4 295 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 PEG10Q86TG7 708 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 ERI1Q8IV48 349 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 GID4Q8IVV7 300 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 TIGD4Q8IY51 512 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 GALNT4Q8N4A0 578 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 OR6N2Q8NGY6 317 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 OR1F12Q8NHA8 337 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 FAM81AQ8TBF8 368 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF418Q8TF45 676 aaPredicted RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 MAP6Q96JE9 813 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms