RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 IFNL4K9M1U5 179 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 CCNB2O95067 398 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 SBK2P0C263 348 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 SELEP16581 610 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 SRP9P49458 86 aaKnown RBP11.77□□□□□ -0.53
USP4-206ENST00000461553 MMP16P51512 607 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 ECH1Q13011 328 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 HNRNPA0Q13151 305 aaKnown RBP11.77□□□□□ -0.53
USP4-206ENST00000461553 SLC35F1Q5T1Q4 408 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 SLC18B1Q6NT16 456 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 ARHGAP24Q8N264 748 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 MUC20Q8N307 709 aaPredicted RBP11.77□□□□□ -0.53
USP4-206ENST00000461553 BHLHE23Q8NDY6 225 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 PROKR2Q8NFJ6 384 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 SEMA6DQ8NFY4 1073 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 OR8G5Q8NG78 346 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 OR13G1Q8NGZ3 307 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 ZNF582Q96NG8 517 aaPredicted RBP11.77□□□□□ -0.53
USP4-206ENST00000461553 BTBD10Q9BSF8 475 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 HCAR1Q9BXC0 346 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 MAGIXQ9H6Y5 334 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 KCNG2Q9UJ96 466 aa11.77□□□□□ -0.53
USP4-206ENST00000461553 IQCF6A8MYZ5 107 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 B2RBV5 119 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 F5H5K5 113 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 RGS9O75916 674 aaPredicted RBP11.76□□□□□ -0.53
USP4-206ENST00000461553 ACSM4P0C7M7 580 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 ZNF823P16415 610 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 MDH2P40926 338 aaKnown RBP11.76□□□□□ -0.53
USP4-206ENST00000461553 MAGEA2P43356 314 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 TRAP1Q12931 704 aaKnown RBP11.76□□□□□ -0.53
USP4-206ENST00000461553 MALLQ13021 153 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 LCN8Q6JVE9 175 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 C1orf229Q6ZS94 237 aaPredicted RBP11.76□□□□□ -0.53
USP4-206ENST00000461553 AQP11Q8NBQ7 271 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 OR2T4Q8NH00 348 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 NANPQ8TBE9 248 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 ZFAND2BQ8WV99 257 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 MEGF10Q96KG7 1140 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 SIGLEC11Q96RL6 698 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 JMJD8Q96S16 334 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 C1QTNF5Q9BXJ0 243 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 TRIM15Q9C019 465 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 C7orf69Q9H7B7 122 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 WDR76Q9H967 626 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 CYB5R1Q9UHQ9 305 aa11.76□□□□□ -0.53
USP4-206ENST00000461553 PPIAL4EA0A075B759 164 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PPIAL4CA0A0B4J2A2 164 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PPIAL4DF5H284 164 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 BHLHE40O14503 412 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 VENTXO95231 258 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 AVPP01185 164 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PPIAL4FP0DN26 164 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 ADRA2CP18825 462 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 GGT2P36268 569 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 SLC6A9P48067 706 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 HMGA2P52926 109 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 TPTEP56180 551 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 DBPQ10586 325 aaPredicted RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 ZMYND11Q15326 602 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 KRTAP27-1Q3LI81 207 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 FAM98BQ52LJ0 330 aaKnown RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 ESCO2Q56NI9 601 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 RASSF6Q6ZTQ3 369 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 DHFR2Q86XF0 187 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 BPIFB2Q8N4F0 458 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 FITM2Q8N6M3 262 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 CYB561A3Q8NBI2 242 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 OR4C15Q8NGM1 316 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 SPTSSAQ969W0 71 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 SLC30A2Q9BRI3 323 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 SUCNR1Q9BXA5 334 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PLA2G12AQ9BZM1 189 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 REEP1Q9H902 201 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PATZ1Q9HBE1 687 aaKnown RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 GCM1Q9NP62 436 aa11.75□□□□□ -0.53
USP4-206ENST00000461553 PNRC2Q9NPJ4 139 aaKnown RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 MRPL22Q9NWU5 206 aaKnown RBP11.75□□□□□ -0.53
USP4-206ENST00000461553 TCRBV5S2A0A599 114 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 LRRC30A6NM36 301 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 A8MXK9 166 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 TMEM178BH3BS89 294 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 M0R135 149 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 MLNRO43193 412 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 LCATP04180 440 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 RPS2P15880 293 aaKnown RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 CALB2P22676 271 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 PYCR1P32322 319 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 HILS1P60008 231 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 ACTG1P63261 375 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 ARMCX4Q5H9R4 360 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 COLCA1Q6ZS62 124 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 USP43Q70EL4 1123 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 PGAP1Q75T13 922 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 MRPL21Q7Z2W9 205 aaKnown RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 LRRC28Q86X40 367 aaPredicted RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 C1orf87Q8N0U7 546 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 CCDC197Q8NCU1 140 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 OR8D4Q8NGM9 314 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms